Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G115120.1 | Barley | plastid | 69.03 | 14.84 |
| TraesCS7A01G514800.1 | Wheat | nucleus | 71.68 | 13.53 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 70.8 | 13.36 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 69.91 | 13.2 |
| TraesCS7B01G431700.2 | Wheat | nucleus | 65.78 | 12.66 |
| TraesCS7D01G505400.1 | Wheat | nucleus | 65.49 | 12.6 |
| TraesCS7A01G515000.1 | Wheat | plastid | 66.08 | 12.57 |
| EER90111 | Sorghum | nucleus | 65.78 | 12.36 |
| Zm00001d046579_P019 | Maize | nucleus | 64.01 | 12.01 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 44.84 | 8.29 |
| VIT_12s0028g03940.t01 | Wine grape | nucleus | 39.23 | 6.95 |
| Solyc07g006820.2.1 | Tomato | nucleus | 37.17 | 6.91 |
| KRH62676 | Soybean | nucleus | 36.87 | 6.62 |
| KRH39697 | Soybean | nucleus | 36.28 | 6.51 |
| AT3G19040.2 | Thale cress | nucleus | 28.32 | 5.36 |
| AT1G32750.1 | Thale cress | nucleus | 30.09 | 5.32 |
| Bra018905.1-P | Field mustard | nucleus | 0.88 | 2.01 |
| CDY49818 | Canola | nucleus | 0.29 | 0.89 |
| Os06t0645800-01 | Rice | nucleus | 0.0 | 0.0 |
| Os06t0645700-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
| CDY22837 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:18.4.7.3 | UniProt:A0A0P0WZS5 | ProteinID:BAS98860.1 | GO:GO:0001075 | GO:GO:0001129 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016573 |
| GO:GO:0016740 | GO:GO:0017025 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0051123 |
| EnsemblPlantsGene:Os06g0645901 | EnsemblPlants:Os06t0645901-00 | PFAM:PF12157 | PANTHER:PTHR13900 | InterPro:TFIID_sub1_DUF3591 | UniParc:UPI000393A922 |
| SEG:seg | : | : | : | : | : |
Description
Similar to Transcription initiation factor TFIID subunit 1. (Os06t0645901-00)
Coordinates
chr6:-:26369197..26370216
Molecular Weight (calculated)
38454.9 Da
IEP (calculated)
4.886
GRAVY (calculated)
-0.697
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: LLSELQITNF TDIVEEDEEV FLRSTIQNLS ALKHIKTNDN FVESDSDEST SDVALRLKDS CLSEQPMKDK DIPTAVQSPV FPDFYPLEHE NWENDIVWGN
101: SPTTAIQPCL TSCAISKESL DDHNEDQAEG YVSGCWDVQN KFHSSSVMAD PFGHTEIPDS TSYRSPENSY SPLRKETAQE NNSLDEPNNI TQPVKIDTTR
201: HLNKLSLLNK ELLEGSWLDN IVWDPSEDVP KPKLIFDLKD DHMLFEILDE KNGDHLRSHA RAMIVTRPMK TSAVENVDHN NQAIALSGRF NISNDKFYSN
301: RKMSQQARSH AKKRATMGLK LVHSVPAQKL QTMKPKLSM
101: SPTTAIQPCL TSCAISKESL DDHNEDQAEG YVSGCWDVQN KFHSSSVMAD PFGHTEIPDS TSYRSPENSY SPLRKETAQE NNSLDEPNNI TQPVKIDTTR
201: HLNKLSLLNK ELLEGSWLDN IVWDPSEDVP KPKLIFDLKD DHMLFEILDE KNGDHLRSHA RAMIVTRPMK TSAVENVDHN NQAIALSGRF NISNDKFYSN
301: RKMSQQARSH AKKRATMGLK LVHSVPAQKL QTMKPKLSM
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.