Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0645700-01 | Rice | cytosol, nucleus | 2.61 | 70.42 |
| Solyc07g006820.2.1 | Tomato | nucleus | 60.48 | 63.47 |
| KRH39697 | Soybean | nucleus | 61.79 | 62.54 |
| KRH62676 | Soybean | nucleus | 61.58 | 62.36 |
| GSMUA_Achr2P11610_001 | Banana | nucleus | 53.95 | 56.3 |
| Os06t0645800-01 | Rice | nucleus | 25.2 | 54.77 |
| AT1G32750.1 | Thale cress | nucleus | 53.42 | 53.26 |
| CDY44660 | Canola | nucleus | 50.76 | 52.69 |
| Bra035499.1-P | Field mustard | nucleus | 52.12 | 52.67 |
| EER90111 | Sorghum | nucleus | 49.09 | 52.05 |
| Zm00001d046579_P019 | Maize | nucleus | 49.14 | 52.02 |
| CDY18566 | Canola | nucleus | 45.84 | 51.14 |
| CDX95471 | Canola | nucleus | 45.74 | 51.05 |
| TraesCS7A01G514800.1 | Wheat | nucleus | 47.88 | 51.0 |
| TraesCS7D01G505200.1 | Wheat | nucleus | 47.83 | 50.95 |
| TraesCS7B01G431500.1 | Wheat | nucleus | 47.73 | 50.84 |
| Bra037541.1-P | Field mustard | nucleus | 46.42 | 50.4 |
| HORVU7Hr1G115120.1 | Barley | plastid | 40.62 | 49.27 |
| TraesCS7B01G431700.2 | Wheat | nucleus | 45.32 | 49.21 |
| TraesCS7D01G505400.1 | Wheat | nucleus | 45.27 | 49.15 |
| AT3G19040.2 | Thale cress | nucleus | 45.16 | 48.21 |
| TraesCS7A01G515000.1 | Wheat | plastid | 44.12 | 47.36 |
| CDX84083 | Canola | nucleus | 5.65 | 45.38 |
| Os06t0645901-00 | Rice | cytosol, nucleus | 6.95 | 39.23 |
Protein Annotations
| Gene3D:1.20.920.10 | MapMan:15.3.4.4.4 | MapMan:15.3.5.3.2 | MapMan:18.4.7.3 | Gene3D:3.10.20.90 | InterPro:Bromodomain |
| InterPro:Bromodomain-like_sf | InterPro:Bromodomain_CS | ProteinID:CCB47267 | ProteinID:CCB47267.1 | ncoils:Coil | UniProt:F6H596 |
| EMBL:FN595235 | GO:GO:0001075 | GO:GO:0001129 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 | GO:GO:0005956 |
| GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016573 | GO:GO:0016740 | GO:GO:0017025 | GO:GO:0019538 | GO:GO:0019887 |
| GO:GO:0030234 | GO:GO:0043565 | GO:GO:0045859 | GO:GO:0045944 | GO:GO:0051123 | InterPro:IPR000626 |
| InterPro:IPR001487 | InterPro:IPR036427 | PFAM:PF00240 | PFAM:PF00439 | PFAM:PF12157 | PRINTS:PR00503 |
| ScanProsite:PS00633 | PFscan:PS50014 | PFscan:PS50053 | SMART:SM00213 | SMART:SM00297 | SUPFAM:SSF47370 |
| SUPFAM:SSF54236 | InterPro:TFIID_sub1_DUF3591 | UniParc:UPI00021083EA | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | ArrayExpress:VIT_12s0028g03940 |
| EnsemblPlantsGene:VIT_12s0028g03940 | EnsemblPlants:VIT_12s0028g03940.t01 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:-:4767101..4820522
Molecular Weight (calculated)
216606.0 Da
IEP (calculated)
6.342
GRAVY (calculated)
-0.787
Length
1913 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFGNVDGAGD LDYNYVFQDA KEHLAALADK LGPSLTDIDL SVKSPQTPAD GAEQDYDEKA EDAVNYEDID EQYEGPEIQA ATEEDYLLSK KEYFSADVSV
0101: ASLDHSASVF DDDNYDEDEE FEKEHEVVDN NSEVQAISSG EQGEHLSVVS EGEKSPDDDL FPGLLEPENL TGDLEDIPEE EPEGLEEPFE GKRSAPLPIL
0201: CVEDGMVILR FSEIFGIHGP LKKGEKRDRR YTIPKERYKS MDAPDNVEED EEAFLKGGCQ AFSFTKHKLL TQDDASVFME DEAELKKVGV VQGTATMELQ
0301: NDEQRKHSCI SAEPMKEDMP VDLSEFWLSP LSPKFYPLDQ QDWEDKIIWD NSPEVSDNSA ESCEISGPDS EVVVDKETEL VTKAQNQRPK FQVAVDEKDH
0401: GVFLGSSPVL IEAFGSRNSS ALINHSLSEI KYHPQLLRLE TRLEMDNSSQ SAVRKEDAIE DPRGSEAIRR FNKLTLQNRD MLEGSWVDRI IWEPHKPISK
0501: PKLILDLQDE QMLFEILDDK DGKNLGLHAG AMLITRPVKS STGDSIELPV HGGPSGGRFN IANDKFYLNR KTSQQLKSHS KKRTAHGVKI LHSIPALKLQ
0601: TMKLKLSNKD IANFHRPKAL WYPHDIEMAV KEQGKLPTQG PMKIILKSLG GKGSKLHVDA EETVSSVKLK ASKKLDFKPS EMVKIFYTGK ELEDHKSLAA
0701: QNVQPNSLLH LVRTKIHLWP RAQKLPGENK SLRPPGAFKK KSDLSVKDGH VFLMEYCEER PLLLGNVGMG ARLCTYYQKS APGDHTGAFM RNGNSSLGTV
0801: LTLDPADKSP FLGDIKPGCS QSSLETNMYR APLFPHKVSS TDYLLVRSAK GKLSIRRIDR IDVVGQQEPH MEVMSPGTKG LQTYIMNRLL VYMYREFRAG
0901: EKRGSLPCIR ADELSAQFPN ISEPFLRKRL KHCADLQKGS NGLLFWVMRR NFRIPLEEEL RRMVTPENVC AYESMQAGLY RLKHLGITRL TLPTGLSSAM
1001: NQLPYEAIAL AAASHIEREL QITPWNLSSN FVACTNQDRE NIERLEITGV GDPSGRGLGF SYVRTAPKAP ISNAMVKKKI TVGRGGSTVT GTDADLRRLS
1101: MEAAREVLLK FNVPEELIAK QTRWHRIAMI RKLSSEQAAS GVKVDPTTIS KYARGQRMSF LQLQQQTREK CQEIWDRQVQ SLSAVDSDEI ESDSEANSDL
1201: DSFAGDLENL LDAEECEDGE EGNCESKHDR TDGVRGLKMR RRPSQAQAEE EIEDEAAEAA ELCRMLMDDD EAERKKKKKT RPVGEEEGLA LGSQLNFGFE
1301: NGQKMKKNSA VVKQLVSKVQ PDGSYSQKEK AFRDSKEVES FLPKRNISGK AKILKKNDAA RMGVLHKKIK IMGDGIKMFK EKKSARESFV CGACGQLGHM
1401: RTNKNCPKYG EDLEAQVEIT EPEKASVKSS SLEHSAQLQQ RTLIKKIIPK SATKMALVET SEGEKSSLKA KNLPVKFKCG SADRLPDKVA PGTTHGPDQP
1501: VISDAETGNK FVKVNKIIIS NKMKPEDSQV ESHKPSIVIR PPTETDKEHV ESHKPSIVIR PPSEIDRDQV ESHKPSNVTR PPTETDRDQV ESHKPSIVIR
1601: PPVDTDRDQP RKKIIIKRPK EISLDQVSQD GSTGLEYRKT KKIVELSSFE KHKKPETKHL NEDAAKRKAR EDKRLWEEEE KRRNAERLRE ERAKRLYEEE
1701: MRMLEEQERL AEIRKFEEAI RREREEEERQ KARKKKKKKM PEMRDNHLED YRTRRNDRRI PERDRSTKRR PVVELGKFGA DYGPPTKRRR GGEVGLSNVL
1801: ESIVDSLRDR YEVSYLFLKP VSKKEAPDYL DIIRDPMDLS TIREKVRKME YKNREDFRHD VWQITYNAHK YNDGRNPGIP PLADQLLELC DYLLSENDAS
1901: LTEAEAGIEY RDT
0101: ASLDHSASVF DDDNYDEDEE FEKEHEVVDN NSEVQAISSG EQGEHLSVVS EGEKSPDDDL FPGLLEPENL TGDLEDIPEE EPEGLEEPFE GKRSAPLPIL
0201: CVEDGMVILR FSEIFGIHGP LKKGEKRDRR YTIPKERYKS MDAPDNVEED EEAFLKGGCQ AFSFTKHKLL TQDDASVFME DEAELKKVGV VQGTATMELQ
0301: NDEQRKHSCI SAEPMKEDMP VDLSEFWLSP LSPKFYPLDQ QDWEDKIIWD NSPEVSDNSA ESCEISGPDS EVVVDKETEL VTKAQNQRPK FQVAVDEKDH
0401: GVFLGSSPVL IEAFGSRNSS ALINHSLSEI KYHPQLLRLE TRLEMDNSSQ SAVRKEDAIE DPRGSEAIRR FNKLTLQNRD MLEGSWVDRI IWEPHKPISK
0501: PKLILDLQDE QMLFEILDDK DGKNLGLHAG AMLITRPVKS STGDSIELPV HGGPSGGRFN IANDKFYLNR KTSQQLKSHS KKRTAHGVKI LHSIPALKLQ
0601: TMKLKLSNKD IANFHRPKAL WYPHDIEMAV KEQGKLPTQG PMKIILKSLG GKGSKLHVDA EETVSSVKLK ASKKLDFKPS EMVKIFYTGK ELEDHKSLAA
0701: QNVQPNSLLH LVRTKIHLWP RAQKLPGENK SLRPPGAFKK KSDLSVKDGH VFLMEYCEER PLLLGNVGMG ARLCTYYQKS APGDHTGAFM RNGNSSLGTV
0801: LTLDPADKSP FLGDIKPGCS QSSLETNMYR APLFPHKVSS TDYLLVRSAK GKLSIRRIDR IDVVGQQEPH MEVMSPGTKG LQTYIMNRLL VYMYREFRAG
0901: EKRGSLPCIR ADELSAQFPN ISEPFLRKRL KHCADLQKGS NGLLFWVMRR NFRIPLEEEL RRMVTPENVC AYESMQAGLY RLKHLGITRL TLPTGLSSAM
1001: NQLPYEAIAL AAASHIEREL QITPWNLSSN FVACTNQDRE NIERLEITGV GDPSGRGLGF SYVRTAPKAP ISNAMVKKKI TVGRGGSTVT GTDADLRRLS
1101: MEAAREVLLK FNVPEELIAK QTRWHRIAMI RKLSSEQAAS GVKVDPTTIS KYARGQRMSF LQLQQQTREK CQEIWDRQVQ SLSAVDSDEI ESDSEANSDL
1201: DSFAGDLENL LDAEECEDGE EGNCESKHDR TDGVRGLKMR RRPSQAQAEE EIEDEAAEAA ELCRMLMDDD EAERKKKKKT RPVGEEEGLA LGSQLNFGFE
1301: NGQKMKKNSA VVKQLVSKVQ PDGSYSQKEK AFRDSKEVES FLPKRNISGK AKILKKNDAA RMGVLHKKIK IMGDGIKMFK EKKSARESFV CGACGQLGHM
1401: RTNKNCPKYG EDLEAQVEIT EPEKASVKSS SLEHSAQLQQ RTLIKKIIPK SATKMALVET SEGEKSSLKA KNLPVKFKCG SADRLPDKVA PGTTHGPDQP
1501: VISDAETGNK FVKVNKIIIS NKMKPEDSQV ESHKPSIVIR PPTETDKEHV ESHKPSIVIR PPSEIDRDQV ESHKPSNVTR PPTETDRDQV ESHKPSIVIR
1601: PPVDTDRDQP RKKIIIKRPK EISLDQVSQD GSTGLEYRKT KKIVELSSFE KHKKPETKHL NEDAAKRKAR EDKRLWEEEE KRRNAERLRE ERAKRLYEEE
1701: MRMLEEQERL AEIRKFEEAI RREREEEERQ KARKKKKKKM PEMRDNHLED YRTRRNDRRI PERDRSTKRR PVVELGKFGA DYGPPTKRRR GGEVGLSNVL
1801: ESIVDSLRDR YEVSYLFLKP VSKKEAPDYL DIIRDPMDLS TIREKVRKME YKNREDFRHD VWQITYNAHK YNDGRNPGIP PLADQLLELC DYLLSENDAS
1901: LTEAEAGIEY RDT
0001: MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
0101: IDEEYDGPEV QVVSEEDHLL PKKEYFSTAV ALGSLKSRAS VFDDEDYDEE EEQEEEQAPV EKSLETEKRE PVVLKEDKAL EYEEEASILD KEDHMDTEDV
0201: QEEEVDELLE GTLDDKGATP LPTLYVEDGM VILQFSEIFA IHEPPQKRDR RENRYVTCRD KYKSMDISEL VEDDEEVLLK SHGRIDTHVE QADLIQLDVP
0301: FPIREGLQLV KASTIGGITP ESREFTKLGR DSCIMGELLK QDFIDDNSSL CQSQLSMQVF PLDQHEWERR IIWEHSPEIS GNSGEIFEPG LEPEGMLVKG
0401: TNSETEQESL NVVNSRVQVQ ADNNMFVPFS ANLLESFGSR GSQSTNESTN KSRHHPQLLR LESQWDENHL SGNDEAGVKK IKRLEKDALG RFSRLVLRER
0501: DLGDEAWLDS IIWDSEKELS RSKLIFDLQD EQMVFEIFDN EESKNLQLHA GAMIVSRSSK SKDETFQEGC ESNSGWQFNL SNDKFYMNGK SSQQLQANTN
0601: KSSVHSLRVF HSVPAIKLQT MKSKLSNKDI ANFHRPKALW YPHDNELAIK QQGKLPTRGS MKIIVKSLGG KGSKLHVGIE ESVSSLRAKA SRKLDFKETE
0701: AVKMFYKGKE LDDEKSLAAQ NVQPNSLVHL IRTKVHLWPW AQKLPGENKS LRPPGAFKKK SDLSTKDGHV FLMEYCEERP LMLSNAGMGA NLCTYYQKSS
0801: PEDQRGNLLR NQSDTLGNVM ILEPGDKSPF LGEIHAGCSQ SSVETNMYKA PIFPQRLQST DYLLVRSPKG KLSLRRIDKI VVVGQQEPRM EVMSPGSKNL
0901: QTYLVNRMLV YVYREFFKRG GGEHPIAADE LSFLFSNLTD AIIKKNMKII ACWKRDKNGQ SYWTKKDSLL EPPESELKKL VAPEHVCSYE SMLAGLYRLK
1001: HLGITRFTLP ASISNALAQL PDEAIALAAA SHIERELQIT PWNLSSNFVA CTNQDRANIE RLEITGVGDP SGRGLGFSYV RAAPKAPAAA GHMKKKAAAG
1101: RGAPTVTGTD ADLRRLSMEA AREVLIKFNV PDEIIAKQTR WHRIAMIRKL SSEQAASGVK VDPTTIGKYA RGQRMSFLQM QQQAREKCQE IWDRQLLSLS
1201: AFDGDENESE NEANSDLDSF AGDLENLLDA EEGGEGEESN ISKNDKLDGV KGLKMRRRPS QVETDEEIED EATEYAELCR LLMQDEDQKK KKKKMKGVGE
1301: GMGSYPPPRP NIALQSGEPV RKANAMDKKP IAIQPDASFL VNESTIKDNR NVDSIIKTPK GKQVKENSNS LGQLKKVKIL NENLKVFKEK KSARENFVCG
1401: ACGQHGHMRT NKHCPRYREN TESQPEGIDM DKSAGKPSSS EPSGLPKLKP IKNSKAAPKS AMKTSVDEAL KGDKLSSKTG GLPLKFRYGI PAGDLSDKPV
1501: SEAPGSSEQA VVSDIDTGIK STSKISKLKI SSKAKPKESK GESERRSHSL MPTFSRERGE SESHKPSVSG QPLSSTERNQ AASSRHTISI PRPSLSMDTD
1601: QAESRRPHLV IRPPTEREQP QKKLVIKRSK EMNDHDMSSL EESPRFESRK TKRMAELAGF QRQQSFRLSE NSLERRPKED RVWWEEEEIS TGRHREVRAR
1701: RDYDDMSVSE EPNEIAEIRR YEEVIRSERE EEERQKAKKK KKKKKLQPEI VEGYLEDYPP RKNDRRLSER GRNVRSRYVS DFERDGAEYA PQPKRRKKGE
1801: VGLANILERI VDTLRLKEEV SRLFLKPVSK KEAPDYLDIV ENPMDLSTIR DKVRKIEYRN REQFRHDVWQ IKYNAHLYND GRNPGIPPLA DQLLEICDYL
1901: LDDYEDQLKE AEKGIDPND
Arabidopsis Description
TAF1Transcription initiation factor TFIID subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.