Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01810.t01 | |
| VIT_12s0028g03940.t01 | |
| VIT_17s0000g04440.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65451 | Soybean | nucleus | 81.51 | 97.0 |
| KRH08285 | Soybean | nucleus | 81.51 | 97.0 |
| EES16412 | Sorghum | nucleus | 81.09 | 96.5 |
| KRH40768 | Soybean | nucleus | 80.67 | 96.0 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 80.67 | 96.0 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 80.67 | 96.0 |
| Solyc01g028930.2.1 | Tomato | nucleus | 81.51 | 95.57 |
| KRH00416 | Soybean | nucleus | 80.25 | 95.5 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 79.41 | 94.5 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 79.41 | 94.5 |
| Os03t0657000-01 | Rice | nucleus | 80.25 | 94.09 |
| CDY26099 | Canola | nucleus | 78.99 | 94.0 |
| CDY08246 | Canola | nucleus | 78.99 | 94.0 |
| Bra011920.1-P | Field mustard | nucleus | 78.99 | 94.0 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 78.57 | 93.03 |
| CDY10555 | Canola | nucleus | 78.15 | 93.0 |
| CDY02435 | Canola | nucleus | 78.15 | 93.0 |
| Bra030855.1-P | Field mustard | nucleus | 78.15 | 93.0 |
| AT1G55520.1 | Thale cress | nucleus | 78.15 | 93.0 |
| AT3G13445.1 | Thale cress | nucleus | 77.31 | 92.0 |
| Bra027434.1-P | Field mustard | nucleus | 76.47 | 91.0 |
| Os12t0580300-01 | Rice | nucleus | 79.41 | 90.87 |
| GSMUA_Achr7P01480_001 | Banana | cytosol, nucleus, plasma membrane | 80.67 | 83.48 |
| CDY56078 | Canola | nucleus | 44.54 | 82.17 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 73.53 | 78.12 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 76.47 | 57.23 |
| HORVU4Hr1G002400.5 | Barley | golgi | 80.67 | 56.97 |
| Zm00001d013856_P001 | Maize | nucleus | 33.61 | 51.28 |
Protein Annotations
| EntrezGene:100243302 | wikigene:100243302 | MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | ProteinID:CBI16563 |
| ProteinID:CBI16563.3 | UniProt:D7SLN5 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | EntrezGene:LOC100243302 | wikigene:LOC100243302 | HAMAP:MF_00408 | PFAM:PF00352 |
| PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP |
| InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0001BE0DFF | ArrayExpress:VIT_06s0004g00180 | EnsemblPlantsGene:VIT_06s0004g00180 |
| EnsemblPlants:VIT_06s0004g00180.t01 | RefSeq:XP_002285755 | RefSeq:XP_002285755.1 | : | : | : |
Description
No Description!
Coordinates
chr6:+:311467..317854
Molecular Weight (calculated)
27117.2 Da
IEP (calculated)
10.315
GRAVY (calculated)
-0.075
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQVLEGSQ PVDLSKHPSG IIPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIRDPKTT ALIFASGKMV CTGAKSEHQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE TYTAFENIYP VLTEFRKNQQ
201: CYRSWVFCSF LFEFSTTKWR FRLLYVVTVT HQKSTSWK
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE TYTAFENIYP VLTEFRKNQQ
201: CYRSWVFCSF LFEFSTTKWR FRLLYVVTVT HQKSTSWK
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.