CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78797
CDX84083
CDY44660
CDY60785

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13445.1	CDX84083	AT1G32750.1	17340043
AT3G13445.1	CDY44660	AT1G32750.1	17340043
AT3G13445.1	CDX78797	AT4G17750.1	9801140
AT3G13445.1	CDY60785	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027434.1-P	Field mustard	nucleus	62.89	100.0
AT3G13445.1	Thale cress	nucleus	61.32	97.5
CDY08246	Canola	nucleus	59.12	94.0
CDY26099	Canola	nucleus	59.12	94.0
CDY02435	Canola	nucleus	58.49	93.0
CDY10555	Canola	nucleus	58.49	93.0
GSMUA_Achr6P23210_001	Banana	nucleus	58.18	92.5
Solyc01g028930.2.1	Tomato	nucleus	58.18	91.13
TraesCS4D01G014000.2	Wheat	nucleus	57.23	91.0
TraesCS4A01G298000.1	Wheat	nucleus	57.23	91.0
KRH65451	Soybean	nucleus	57.23	91.0
KRH08285	Soybean	nucleus	57.23	91.0
KRH40768	Soybean	nucleus	56.92	90.5
EES16412	Sorghum	nucleus	56.92	90.5
TraesCS5A01G022000.1	Wheat	nucleus	56.6	90.0
KRH00416	Soybean	nucleus	56.6	90.0
TraesCS5D01G027800.3	Wheat	nucleus	56.6	90.0
Os03t0657000-01	Rice	nucleus	56.92	89.16
TraesCS5B01G018500.1	Wheat	nucleus	56.29	89.05
Os12t0580300-01	Rice	nucleus	55.97	85.58
GSMUA_Achr1P26830_001	Banana	nucleus	58.49	85.32
CDY56078	Canola	nucleus	33.65	82.95
CDX81013	Canola	nucleus	17.3	82.09
CDY14075	Canola	nucleus	52.52	81.86
CDY04996	Canola	nucleus	52.52	81.86
CDY09928	Canola	cytosol, golgi, nucleus	47.17	81.08
CDY55771	Canola	nucleus	16.67	79.1
VIT_06s0004g00180.t01	Wine grape	nucleus	57.23	76.47
TraesCS4B01G015700.2	Wheat	nucleus	52.52	74.55
CDY55768	Canola	cytoskeleton, cytosol, nucleus	41.2	74.43
CDY55770	Canola	mitochondrion	13.84	72.13
CDX81012	Canola	mitochondrion	13.52	70.49
GSMUA_Achr5P08990_001	Banana	nucleus	57.23	64.08
HORVU4Hr1G002400.5	Barley	golgi	60.38	56.97
Zm00001d013856_P001	Maize	nucleus	25.47	51.92

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	GO:A0A078GE19	UniProt:A0A078GE19	EnsemblPlants:CDY23601
ProteinID:CDY23601	ProteinID:CDY23601.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00023812001	InterPro:IPR012295	HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351
PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf
InterPro:TBP_eukaryotic	UniParc:UPI0004EE5C41	:	:	:	:

Description

BnaC05g39930DBnaC05g39930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE19]

Coordinates

chrLK032145:+:324067..326389

Molecular Weight (calculated)

36260.4 Da

IEP (calculated)

10.737

GRAVY (calculated)

-0.219

Length

318 amino acids

Sequence
(BLAST)

001: MCWSIFENRI KPKITVSVHA YFRVLTWLNV SGRSPNSKTQ AIASPHRSKK TSSSFIHKRE TKESQITLPL YINTHFTKSF FPLQSFRSVY KSLTSSFYFA
101: KSPRNPRFRV GISKRERQMT DQGLEGSNPV DLAEHPSGIV PTLQNIVSTV NLDCKLDLKA IALQARNAEY NPKRFAAVIM RIREPKTTAL IFASGKMVCT
201: GAKSEYFSKM AARKYARIVQ KLGFPAKFKD FKIQNIVGSC DVKFPIRLEG LAYSHAAFSS YEPELFPGLI YRMKVPKIVL LIFVSGKIVI TGAKMREETY
301: KAFENIYPVL TEFRKIQQ

Best Arabidopsis Sequence Match ( AT3G13445.1 )
(BLAST)

001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ

Arabidopsis Description

TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.