CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55770	Canola	mitochondrion	98.36	98.36
CDY09928	Canola	cytosol, golgi, nucleus	96.72	31.89
CDY55768	Canola	cytoskeleton, cytosol, nucleus	88.52	30.68
Zm00001d029737_P001	Maize	nucleus, plasma membrane, plastid	39.34	22.64
CDY14075	Canola	nucleus	72.13	21.57
CDY02435	Canola	nucleus	68.85	21.0
CDY08246	Canola	nucleus	68.85	21.0
CDY10555	Canola	nucleus	68.85	21.0
CDY26099	Canola	nucleus	68.85	21.0
CDY04996	Canola	nucleus	68.85	20.59
GSMUA_Achr6P29890_001	Banana	nucleus	55.74	16.43
CDY23601	Canola	mitochondrion, nucleus, plastid	70.49	13.52
CDY56078	Canola	nucleus	27.87	13.18
Zm00001d019598_P002	Maize	nucleus	60.66	12.25
CDX81013	Canola	nucleus	0.0	0.0
CDY55771	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.310.10	MapMan:35.2	GO:A0A078CWC3	EnsemblPlants:CDX81012	ProteinID:CDX81012	ProteinID:CDX81012.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00134444001	InterPro:IPR012295
PFAM:PF00352	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_dom_sf
UniParc:UPI0004EF14C6	:	:	:	:	:

Description

BnaC03g02660D

Coordinates

chrLK031823:-:1266436..1266621

Molecular Weight (calculated)

7056.0 Da

IEP (calculated)

11.059

GRAVY (calculated)

0.018

Length

61 amino acids

Sequence
(BLAST)

1: MFPGLIYRIR GMKGMKGAQL VLLIFVSGKI VITGAKKREE TYKAFENIYP VLTQFQKKFT R

Best Arabidopsis Sequence Match ( AT3G13445.1 )
(BLAST)

001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ

Arabidopsis Description

TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.