CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78797
CDX84083
CDX87186
CDY02204
CDY16838
CDY44660
CDY60785
CDY67704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	CDX84083	AT1G32750.1	17340043
AT1G55520.1	CDY44660	AT1G32750.1	17340043
AT1G55520.1	CDX78797	AT4G17750.1	9801140
AT1G55520.1	CDY60785	AT4G17750.1	9801140
AT1G55520.1	CDX87186	AT5G23080.1	16024589
AT1G55520.1	CDY02204	AT5G23080.1	16024589
AT1G55520.1	CDY16838	AT5G23080.1	16024589
AT1G55520.1	CDY67704	AT5G23080.1	16024589

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08246	Canola	nucleus	87.6	56.5
CDY26099	Canola	nucleus	87.6	56.5
AT1G55520.1	Thale cress	nucleus	86.05	55.5
CDX81013	Canola	nucleus	28.68	55.22
CDY02435	Canola	nucleus	84.5	54.5
CDY10555	Canola	nucleus	83.72	54.0
KRH40768	Soybean	nucleus	83.72	54.0
KRH00416	Soybean	nucleus	83.72	54.0
TraesCS4D01G014000.2	Wheat	nucleus	82.95	53.5
TraesCS4A01G298000.1	Wheat	nucleus	82.95	53.5
Solyc01g028930.2.1	Tomato	nucleus	83.72	53.2
TraesCS5D01G027800.3	Wheat	nucleus	82.17	53.0
TraesCS5A01G022000.1	Wheat	nucleus	82.17	53.0
KRH65451	Soybean	nucleus	82.17	53.0
KRH08285	Soybean	nucleus	82.17	53.0
GSMUA_Achr6P23210_001	Banana	nucleus	82.17	53.0
EES16412	Sorghum	nucleus	82.17	53.0
TraesCS5B01G018500.1	Wheat	nucleus	82.17	52.74
CDY55771	Canola	nucleus	27.13	52.24
Os03t0657000-01	Rice	nucleus	82.17	52.22
Os12t0580300-01	Rice	nucleus	80.62	50.0
GSMUA_Achr1P26830_001	Banana	nucleus	82.95	49.08
CDY55768	Canola	cytoskeleton, cytosol, nucleus	64.34	47.16
CDY14075	Canola	nucleus	70.54	44.61
CDY04996	Canola	nucleus	70.54	44.61
VIT_06s0004g00180.t01	Wine grape	nucleus	82.17	44.54
TraesCS4B01G015700.2	Wheat	nucleus	73.64	42.41
CDY09928	Canola	cytosol, golgi, nucleus	59.69	41.62
GSMUA_Achr5P08990_001	Banana	nucleus	81.4	36.97
CDY23601	Canola	mitochondrion, nucleus, plastid	82.95	33.65
HORVU4Hr1G002400.5	Barley	golgi	82.95	31.75
CDX81012	Canola	mitochondrion	13.18	27.87
CDY55770	Canola	mitochondrion	13.18	27.87
Zm00001d013856_P001	Maize	nucleus	32.56	26.92

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	GO:A0A078IWK0	UniProt:A0A078IWK0	EnsemblPlants:CDY56078
ProteinID:CDY56078	ProteinID:CDY56078.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00017792001	InterPro:IPR012295	PFAM:PF00352	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945
InterPro:TBP	InterPro:TBP_dom_sf	UniParc:UPI0004EDC341	:	:	:

Description

BnaC06g41680DBnaC06g41680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWK0]

Coordinates

chrLK033455:-:17371..18762

Molecular Weight (calculated)

14698.9 Da

IEP (calculated)

10.418

GRAVY (calculated)

-0.360

Length

129 amino acids

Sequence
(BLAST)

001: MEGSQPVDLT QHPSRIVPTL HELRLQAIAL QARNAESNPK VCIRGAKREQ LSKLAARTYA RIVQKLGFPA KFKDFKIQNI VGSCDVKFPI RLEGLAYSHS
101: AFSRIKREET CTAFENIYPV LTEFRKIQQ

Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.