Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028725.1-P | Field mustard | nucleus | 99.51 | 99.51 |
| CDY14075 | Canola | nucleus | 97.55 | 97.55 |
| CDY08246 | Canola | nucleus | 81.37 | 83.0 |
| CDY26099 | Canola | nucleus | 81.37 | 83.0 |
| CDY02435 | Canola | nucleus | 80.39 | 82.0 |
| CDY10555 | Canola | nucleus | 80.39 | 82.0 |
| CDX81013 | Canola | nucleus | 25.98 | 79.1 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 70.59 | 77.84 |
| CDY55771 | Canola | nucleus | 25.49 | 77.61 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 62.25 | 72.16 |
| CDY56078 | Canola | nucleus | 44.61 | 70.54 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 71.57 | 70.53 |
| CDY55770 | Canola | mitochondrion | 21.08 | 70.49 |
| CDX81012 | Canola | mitochondrion | 20.59 | 68.85 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 81.86 | 52.52 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 17.16 | 33.02 |
| Zm00001d019598_P002 | Maize | nucleus | 38.73 | 26.16 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:A0A078EUT4 | EnsemblPlants:CDY04996 | ProteinID:CDY04996 |
| ProteinID:CDY04996.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00119729001 |
| InterPro:IPR012295 | HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 |
| PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic |
| UniParc:UPI0004EF049A | : | : | : | : | : |
Description
BnaAnng01780D
Coordinates
chrLK031958:-:990721..991335
Molecular Weight (calculated)
23201.6 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.040
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDELQGST DPVDLSNHPS GLVPTLQNIV STVNLDCKLD LKEIALKARN AEYNPKRFAA VIMRIREPKT TALIFASGRM VCTGAKTECF SKLAARKYAR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTFRAFENI YPVLTQFKKI
201: CIHR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTFRAFENI YPVLTQFKKI
201: CIHR
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.