Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55770 | Canola | mitochondrion | 23.58 | 40.98 |
| CDX81012 | Canola | mitochondrion | 22.64 | 39.34 |
| Zm00001d027501_P001 | Maize | mitochondrion, nucleus | 32.08 | 23.61 |
| Zm00001d033472_P004 | Maize | nucleus | 37.74 | 18.6 |
| Bra005905.1-P | Field mustard | nucleus | 31.13 | 18.44 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 30.19 | 17.3 |
| CDY04996 | Canola | nucleus | 33.02 | 17.16 |
| CDY14075 | Canola | nucleus | 33.02 | 17.16 |
| Bra028725.1-P | Field mustard | nucleus | 33.02 | 17.16 |
| Bra005902.1-P | Field mustard | nucleus | 30.19 | 15.38 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 25.47 | 15.34 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 29.25 | 14.98 |
| Zm00001d019598_P002 | Maize | nucleus | 40.57 | 14.24 |
| Zm00001d013631_P001 | Maize | nucleus | 37.74 | 10.2 |
| Zm00001d013856_P001 | Maize | nucleus | 9.43 | 6.41 |
| CDX81013 | Canola | nucleus | 1.89 | 2.99 |
| CDY55771 | Canola | nucleus | 1.89 | 2.99 |
Protein Annotations
| Gene3D:3.30.310.10 | MapMan:35.2 | UniProt:A0A1D6K7I2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | ProteinID:ONL99513.1 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 |
| PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_dom_sf | UniParc:UPI00084480A0 | EnsemblPlantsGene:Zm00001d029737 |
| EnsemblPlants:Zm00001d029737_P001 | EnsemblPlants:Zm00001d029737_T001 | SEG:seg | : | : | : |
Description
TATA-box-binding protein 2
Coordinates
chr1:-:84613322..84615287
Molecular Weight (calculated)
12016.2 Da
IEP (calculated)
10.632
GRAVY (calculated)
0.282
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVPPSHSSH STHQPRPDLA MLDSCQITKI NLFKFGVSIL NFCVYGKVPH LMTFLVTYEA KLLPGLIYRM KRPKIVLLFF VSGKIVLTRA KVRDETLLLK
101: LSIQSS
101: LSIQSS
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
Arabidopsis Description
TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.