Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 79.33 | 93.75 |
| Bra005905.1-P | Field mustard | nucleus | 76.44 | 88.83 |
| Bra027434.1-P | Field mustard | nucleus | 78.85 | 82.0 |
| Bra011920.1-P | Field mustard | nucleus | 77.88 | 81.0 |
| Bra030855.1-P | Field mustard | nucleus | 77.4 | 80.5 |
| Bra028725.1-P | Field mustard | nucleus | 77.4 | 78.92 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 66.35 | 66.67 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 15.38 | 30.19 |
| Zm00001d019598_P002 | Maize | nucleus | 37.02 | 25.5 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | EnsemblPlantsGene:Bra005902 | EnsemblPlants:Bra005902.1 | EnsemblPlants:Bra005902.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR012295 | UniProt:M4CNW4 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 |
| InterPro:TBP | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI000253F64A | : | : |
Description
AT3G13445 (E=4e-086) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding
Coordinates
chrA03:-:1120793..1121419
Molecular Weight (calculated)
23390.7 Da
IEP (calculated)
10.444
GRAVY (calculated)
-0.159
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQDFEASS NPVDRTNHPS GIVPTLQNIV STVNLDCKLD LKSIALQARN AEYNPKRLAA VIMRIREPKT TALIFASGRM VCTGAKTEDS SKLAARKYAR
101: IIQKLGFQAK FKDFKIQSIV ASCDVKFPIR LEGLACYRHA FASYEPEIFP GLIYRIRGKI GMKGAQIVLL IFVSGKMVIT GSKKREDTYK AFENIYPVLT
201: QFQKKFTR
101: IIQKLGFQAK FKDFKIQSIV ASCDVKFPIR LEGLACYRHA FASYEPEIFP GLIYRIRGKI GMKGAQIVLL IFVSGKMVIT GSKKREDTYK AFENIYPVLT
201: QFQKKFTR
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
Arabidopsis Description
TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.