Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55770 | Canola | mitochondrion | 31.25 | 90.16 |
| CDX81012 | Canola | mitochondrion | 30.68 | 88.52 |
| CDX81013 | Canola | nucleus | 30.68 | 80.6 |
| Bra005902.1-P | Field mustard | nucleus | 93.75 | 79.33 |
| CDY55771 | Canola | nucleus | 29.55 | 77.61 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 78.41 | 74.59 |
| CDY08246 | Canola | nucleus | 73.86 | 65.0 |
| CDY26099 | Canola | nucleus | 73.86 | 65.0 |
| CDY02435 | Canola | nucleus | 73.3 | 64.5 |
| CDY10555 | Canola | nucleus | 73.3 | 64.5 |
| CDY56078 | Canola | nucleus | 47.16 | 64.34 |
| CDY14075 | Canola | nucleus | 73.3 | 63.24 |
| CDY04996 | Canola | nucleus | 72.16 | 62.25 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 61.36 | 52.17 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 74.43 | 41.2 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 15.34 | 25.47 |
| Zm00001d019598_P002 | Maize | nucleus | 40.34 | 23.51 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:A0A078J1D3 | UniProt:A0A078J1D3 | EnsemblPlants:CDY55768 |
| ProteinID:CDY55768 | ProteinID:CDY55768.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00017328001 | InterPro:IPR012295 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0004EDFA33 | : |
Description
BnaA03g55430DBnaA03g55430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1D3]
Coordinates
chrLK033427:-:41848..42474
Molecular Weight (calculated)
19964.3 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.287
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDQDFESTS NPVDRTNHPS GIVPTLQNIV STVNLDCKLD LKSIALQARN AEYNPKHSSK LAARKYARII QKLGFQAKFK DFKIQNIVAS CDVKFPIRLE
101: GLACYHHAFA SYEPEIFPGL IYRIRGKTGM KGAQIVLLIF VSGKMVITGS KKREDTYKAF ENIYPVLTQF QKKFTR
101: GLACYHHAFA SYEPEIFPGL IYRIRGKTGM KGAQIVLLIF VSGKMVITGS KKREDTYKAF ENIYPVLTQF QKKFTR
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.