Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04996 | Canola | nucleus | 97.55 | 97.55 |
| CDY08246 | Canola | nucleus | 80.39 | 82.0 |
| CDY26099 | Canola | nucleus | 80.39 | 82.0 |
| CDY02435 | Canola | nucleus | 79.9 | 81.5 |
| CDY10555 | Canola | nucleus | 79.9 | 81.5 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 70.59 | 77.84 |
| CDX81013 | Canola | nucleus | 25.0 | 76.12 |
| CDY55771 | Canola | nucleus | 24.51 | 74.63 |
| CDY55770 | Canola | mitochondrion | 22.06 | 73.77 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 63.24 | 73.3 |
| CDX81012 | Canola | mitochondrion | 21.57 | 72.13 |
| CDY56078 | Canola | nucleus | 44.61 | 70.54 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 70.59 | 69.57 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 81.86 | 52.52 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 17.16 | 33.02 |
| Zm00001d019598_P002 | Maize | nucleus | 39.22 | 26.49 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:A0A078FI29 | UniProt:A0A078FI29 | EnsemblPlants:CDY14075 |
| ProteinID:CDY14075 | ProteinID:CDY14075.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00078611001 | InterPro:IPR012295 | HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 |
| PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf |
| InterPro:TBP_eukaryotic | UniParc:UPI0004EE317C | : | : | : | : |
Description
BnaC02g01920DBnaC02g01920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI29]
Coordinates
chrLK032040:+:305140..305754
Molecular Weight (calculated)
23218.7 Da
IEP (calculated)
10.039
GRAVY (calculated)
-0.046
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDELQGST DQVDLTNHPS GLVPTLQNIV STVNLDCKLD LKEIALKARN AEFNPKRFAA VIMRIREPKT TALIFASGRM VCTGAKTECF SKLAARKYAR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTYKAFENI YPVLTQFKKI
201: CIHR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTYKAFENI YPVLTQFKKI
201: CIHR
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.