CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78797
CDX84083
CDX87186
CDY02204
CDY16838
CDY44660
CDY60785
CDY67704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	CDX84083	AT1G32750.1	17340043
AT1G55520.1	CDY44660	AT1G32750.1	17340043
AT1G55520.1	CDX78797	AT4G17750.1	9801140
AT1G55520.1	CDY60785	AT4G17750.1	9801140
AT1G55520.1	CDX87186	AT5G23080.1	16024589
AT1G55520.1	CDY02204	AT5G23080.1	16024589
AT1G55520.1	CDY16838	AT5G23080.1	16024589
AT1G55520.1	CDY67704	AT5G23080.1	16024589

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030855.1-P	Field mustard	nucleus	100.0	100.0
CDY10555	Canola	nucleus	99.5	99.5
CDY26099	Canola	nucleus	97.5	97.5
CDY08246	Canola	nucleus	97.5	97.5
AT1G55520.1	Thale cress	nucleus	95.0	95.0
GSMUA_Achr6P23210_001	Banana	nucleus	93.5	93.5
TraesCS4A01G298000.1	Wheat	nucleus	93.0	93.0
TraesCS4D01G014000.2	Wheat	nucleus	93.0	93.0
KRH65451	Soybean	nucleus	93.0	93.0
KRH40768	Soybean	nucleus	93.0	93.0
KRH08285	Soybean	nucleus	93.0	93.0
KRH00416	Soybean	nucleus	92.5	92.5
EES16412	Sorghum	nucleus	92.5	92.5
TraesCS5A01G022000.1	Wheat	nucleus	92.0	92.0
TraesCS5D01G027800.3	Wheat	nucleus	92.0	92.0
Solyc01g028930.2.1	Tomato	nucleus	93.0	91.63
Os03t0657000-01	Rice	nucleus	91.5	90.15
TraesCS5B01G018500.1	Wheat	nucleus	90.5	90.05
Os12t0580300-01	Rice	nucleus	91.5	87.98
GSMUA_Achr1P26830_001	Banana	nucleus	94.0	86.24
CDY56078	Canola	nucleus	54.5	84.5
CDY04996	Canola	nucleus	82.0	80.39
CDY14075	Canola	nucleus	81.5	79.9
CDX81013	Canola	nucleus	26.5	79.1
CDY09928	Canola	cytosol, golgi, nucleus	72.5	78.38
VIT_06s0004g00180.t01	Wine grape	nucleus	93.0	78.15
CDY55771	Canola	nucleus	25.5	76.12
TraesCS4B01G015700.2	Wheat	nucleus	85.0	75.89
CDY55768	Canola	cytoskeleton, cytosol, nucleus	64.5	73.3
CDY55770	Canola	mitochondrion	21.5	70.49
CDX81012	Canola	mitochondrion	21.0	68.85
GSMUA_Achr5P08990_001	Banana	nucleus	93.0	65.49
CDY23601	Canola	mitochondrion, nucleus, plastid	93.0	58.49
HORVU4Hr1G002400.5	Barley	golgi	93.0	55.19
Zm00001d013856_P001	Maize	nucleus	40.0	51.28

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	GO:A0A078EK30	EnsemblPlants:CDY02435	ProteinID:CDY02435
ProteinID:CDY02435.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00114053001
InterPro:IPR012295	HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126
PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic
UniParc:UPI0002547066	:	:	:	:	:

Description

BnaA08g00420D

Coordinates

chrLK031935:+:2606..4715

Molecular Weight (calculated)

22509.8 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.057

Length

200 amino acids

Sequence
(BLAST)

001: MAEQGMEGSQ PVDLMKHPSG IIPTLQNIVS TVNLDCKLDL KSIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHFS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLTEFRKIQQ

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.