Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU5Hr1G123770.1 | |
HORVU7Hr1G047420.9 | |
HORVU7Hr1G115120.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G298000.1 | Wheat | nucleus | 59.05 | 99.5 |
TraesCS4D01G014000.2 | Wheat | nucleus | 59.05 | 99.5 |
TraesCS5D01G027800.3 | Wheat | nucleus | 58.46 | 98.5 |
TraesCS5A01G022000.1 | Wheat | nucleus | 58.46 | 98.5 |
KRG94816 | Soybean | cytosol, mitochondrion, nucleus | 35.01 | 97.52 |
Os03t0657000-01 | Rice | nucleus | 58.46 | 97.04 |
EES16412 | Sorghum | nucleus | 57.57 | 97.0 |
TraesCS5B01G018500.1 | Wheat | nucleus | 57.57 | 96.52 |
KRH40768 | Soybean | nucleus | 56.97 | 96.0 |
KRH00416 | Soybean | nucleus | 56.68 | 95.5 |
GSMUA_Achr6P23210_001 | Banana | nucleus | 56.38 | 95.0 |
KRH65451 | Soybean | nucleus | 56.08 | 94.5 |
KRH08285 | Soybean | nucleus | 56.08 | 94.5 |
CDY26099 | Canola | nucleus | 55.79 | 94.0 |
CDY08246 | Canola | nucleus | 55.79 | 94.0 |
Bra011920.1-P | Field mustard | nucleus | 55.79 | 94.0 |
Os12t0580300-01 | Rice | nucleus | 57.86 | 93.75 |
Solyc01g028930.2.1 | Tomato | nucleus | 56.38 | 93.6 |
CDY10555 | Canola | nucleus | 55.19 | 93.0 |
CDY02435 | Canola | nucleus | 55.19 | 93.0 |
Bra030855.1-P | Field mustard | nucleus | 55.19 | 93.0 |
AT1G55520.1 | Thale cress | nucleus | 54.9 | 92.5 |
KRG94819 | Soybean | nucleus | 21.66 | 92.41 |
AT3G13445.1 | Thale cress | nucleus | 54.01 | 91.0 |
Bra027434.1-P | Field mustard | nucleus | 54.01 | 91.0 |
Zm00001d033472_P004 | Maize | nucleus | 57.57 | 90.23 |
GSMUA_Achr1P26830_001 | Banana | nucleus | 56.68 | 87.61 |
HORVU5Hr1G006000.6 | Barley | cytosol, extracellular, nucleus | 52.23 | 87.13 |
CDY56078 | Canola | nucleus | 31.75 | 82.95 |
GSMUA_Achr7P01480_001 | Banana | cytosol, nucleus, plasma membrane | 56.08 | 82.17 |
TraesCS4B01G015700.2 | Wheat | nucleus | 53.71 | 80.8 |
VIT_06s0004g00180.t01 | Wine grape | nucleus | 56.97 | 80.67 |
KRH69926 | Soybean | cytosol, nucleus, plastid | 25.52 | 69.92 |
GSMUA_Achr5P08990_001 | Banana | nucleus | 55.49 | 65.85 |
HORVU1Hr1G035600.1 | Barley | nucleus, plastid | 53.71 | 60.54 |
CDY23601 | Canola | mitochondrion, nucleus, plastid | 56.97 | 60.38 |
Zm00001d013631_P001 | Maize | nucleus | 56.97 | 48.98 |
Protein Annotations
MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | UniProt:A0A287MXF6 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G002400 | EnsemblPlants:HORVU4Hr1G002400.5 | InterPro:IPR012295 | HAMAP:MF_00408 |
PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 |
InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI000B46C82D | SEG:seg |
Description
No Description!
Coordinates
chrchr4H:-:4368153..4372584
Molecular Weight (calculated)
37375.9 Da
IEP (calculated)
10.661
GRAVY (calculated)
-0.095
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: SGVSQKISFP FELVTKVFFL MYKRSIHLTQ NVPLVVVYRT IIMTGHRGSP RWPYKYPSRP TGHGQHIPPP ASPPPHASPL PRDRSLPLSA PRSSCLRFSI
101: KDPEFRNFTP TFPARAPLPA ISGLGSALIR PGSSVAMAEA ALEGSEPVDL SKHPSGIIPT LQNIVSTVNL DCKLDLKAIA LQARNAEYNP KRFAAVIMRI
201: REPKTTALIF ASGKMVVCTG AKSEQQSKLA ARKYARIIQK LGFPAKFKDF KIQNIVGSCD VKFPIRLEGL AYSHGAFSSY EPELFPGLIY RMKQPKIVLL
301: IFVSGKIVLT GAKVREETYT AFENIYPVLT EFRKVQQ
101: KDPEFRNFTP TFPARAPLPA ISGLGSALIR PGSSVAMAEA ALEGSEPVDL SKHPSGIIPT LQNIVSTVNL DCKLDLKAIA LQARNAEYNP KRFAAVIMRI
201: REPKTTALIF ASGKMVVCTG AKSEQQSKLA ARKYARIIQK LGFPAKFKDF KIQNIVGSCD VKFPIRLEGL AYSHGAFSSY EPELFPGLIY RMKQPKIVLL
301: IFVSGKIVLT GAKVREETYT AFENIYPVLT EFRKVQQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.