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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • plastid 1
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:nucleus, plastid, secretory
iPSORT:plastid
MultiLoc:nucleus
TargetP:secretory
YLoc:golgi
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G298000.1 Wheat nucleus 59.05 99.5
TraesCS4D01G014000.2 Wheat nucleus 59.05 99.5
TraesCS5D01G027800.3 Wheat nucleus 58.46 98.5
TraesCS5A01G022000.1 Wheat nucleus 58.46 98.5
KRG94816 Soybean cytosol, mitochondrion, nucleus 35.01 97.52
Os03t0657000-01 Rice nucleus 58.46 97.04
EES16412 Sorghum nucleus 57.57 97.0
TraesCS5B01G018500.1 Wheat nucleus 57.57 96.52
KRH40768 Soybean nucleus 56.97 96.0
KRH00416 Soybean nucleus 56.68 95.5
GSMUA_Achr6P23210_001 Banana nucleus 56.38 95.0
KRH65451 Soybean nucleus 56.08 94.5
KRH08285 Soybean nucleus 56.08 94.5
CDY26099 Canola nucleus 55.79 94.0
CDY08246 Canola nucleus 55.79 94.0
Bra011920.1-P Field mustard nucleus 55.79 94.0
Os12t0580300-01 Rice nucleus 57.86 93.75
Solyc01g028930.2.1 Tomato nucleus 56.38 93.6
CDY10555 Canola nucleus 55.19 93.0
CDY02435 Canola nucleus 55.19 93.0
Bra030855.1-P Field mustard nucleus 55.19 93.0
AT1G55520.1 Thale cress nucleus 54.9 92.5
KRG94819 Soybean nucleus 21.66 92.41
AT3G13445.1 Thale cress nucleus 54.01 91.0
Bra027434.1-P Field mustard nucleus 54.01 91.0
Zm00001d033472_P004 Maize nucleus 57.57 90.23
GSMUA_Achr1P26830_001 Banana nucleus 56.68 87.61
HORVU5Hr1G006000.6 Barley cytosol, extracellular, nucleus 52.23 87.13
CDY56078 Canola nucleus 31.75 82.95
GSMUA_Achr7P01480_001 Banana cytosol, nucleus, plasma membrane 56.08 82.17
TraesCS4B01G015700.2 Wheat nucleus 53.71 80.8
VIT_06s0004g00180.t01 Wine grape nucleus 56.97 80.67
KRH69926 Soybean cytosol, nucleus, plastid 25.52 69.92
GSMUA_Achr5P08990_001 Banana nucleus 55.49 65.85
HORVU1Hr1G035600.1 Barley nucleus, plastid 53.71 60.54
CDY23601 Canola mitochondrion, nucleus, plastid 56.97 60.38
Zm00001d013631_P001 Maize nucleus 56.97 48.98
Protein Annotations
MapMan:15.3.5.3.1MapMan:15.4.1Gene3D:3.30.310.10UniProt:A0A287MXF6GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0006139GO:GO:0006352GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:HORVU4Hr1G002400EnsemblPlants:HORVU4Hr1G002400.5InterPro:IPR012295HAMAP:MF_00408
PFAM:PF00352PRINTS:PR00686ScanProsite:PS00351PANTHER:PTHR10126PANTHER:PTHR10126:SF36SUPFAM:SSF55945
InterPro:TBPInterPro:TBP_CSInterPro:TBP_dom_sfInterPro:TBP_eukaryoticUniParc:UPI000B46C82DSEG:seg
Description
No Description!
Coordinates
chrchr4H:-:4368153..4372584
Molecular Weight (calculated)
37375.9 Da
IEP (calculated)
10.661
GRAVY (calculated)
-0.095
Length
337 amino acids
Sequence
(BLAST)
001: SGVSQKISFP FELVTKVFFL MYKRSIHLTQ NVPLVVVYRT IIMTGHRGSP RWPYKYPSRP TGHGQHIPPP ASPPPHASPL PRDRSLPLSA PRSSCLRFSI
101: KDPEFRNFTP TFPARAPLPA ISGLGSALIR PGSSVAMAEA ALEGSEPVDL SKHPSGIIPT LQNIVSTVNL DCKLDLKAIA LQARNAEYNP KRFAAVIMRI
201: REPKTTALIF ASGKMVVCTG AKSEQQSKLA ARKYARIIQK LGFPAKFKDF KIQNIVGSCD VKFPIRLEGL AYSHGAFSSY EPELFPGLIY RMKQPKIVLL
301: IFVSGKIVLT GAKVREETYT AFENIYPVLT EFRKVQQ
Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.