Factsheet for Bra027434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035499.1-P
Bra040179.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13445.1	Bra035499.1-P	AT1G32750.1	17340043
AT3G13445.1	Bra040179.1-P	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G13445.1	Thale cress	nucleus	97.5	97.5
Bra011920.1-P	Field mustard	nucleus	94.0	94.0
Bra030855.1-P	Field mustard	nucleus	93.0	93.0
GSMUA_Achr6P23210_001	Banana	nucleus	92.5	92.5
Solyc01g028930.2.1	Tomato	nucleus	92.5	91.13
TraesCS4D01G014000.2	Wheat	nucleus	91.0	91.0
TraesCS4A01G298000.1	Wheat	nucleus	91.0	91.0
KRH65451	Soybean	nucleus	91.0	91.0
KRH08285	Soybean	nucleus	91.0	91.0
EES16412	Sorghum	nucleus	90.5	90.5
KRH40768	Soybean	nucleus	90.5	90.5
KRH00416	Soybean	nucleus	90.0	90.0
TraesCS5A01G022000.1	Wheat	nucleus	90.0	90.0
TraesCS5D01G027800.3	Wheat	nucleus	90.0	90.0
Os03t0657000-01	Rice	nucleus	90.5	89.16
TraesCS5B01G018500.1	Wheat	nucleus	89.5	89.05
Os12t0580300-01	Rice	nucleus	89.0	85.58
GSMUA_Achr1P26830_001	Banana	nucleus	93.0	85.32
Bra028725.1-P	Field mustard	nucleus	83.0	81.37
Bra005905.1-P	Field mustard	nucleus	71.0	79.33
Bra005902.1-P	Field mustard	nucleus	82.0	78.85
VIT_06s0004g00180.t01	Wine grape	nucleus	91.0	76.47
TraesCS4B01G015700.2	Wheat	nucleus	83.5	74.55
GSMUA_Achr5P08990_001	Banana	nucleus	91.0	64.08
CDY23601	Canola	mitochondrion, nucleus, plastid	100.0	62.89
HORVU4Hr1G002400.5	Barley	golgi	91.0	54.01
Zm00001d013856_P001	Maize	nucleus	40.5	51.92

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EnsemblPlantsGene:Bra027434	EnsemblPlants:Bra027434.1	EnsemblPlants:Bra027434.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR012295	UniProt:M4EF72	HAMAP:MF_00408	PFAM:PF00352
PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP
InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI000254807D	:	:

Description

AT3G13445 (E=5e-108) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding

Coordinates

chrA05:-:20901485..20902790

Molecular Weight (calculated)

22430.7 Da

IEP (calculated)

10.091

GRAVY (calculated)

-0.011

Length

200 amino acids

Sequence
(BLAST)

001: MTDQGLEGSN PVDLAEHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEYFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMREE TYKAFENIYP VLTEFRKIQQ

Best Arabidopsis Sequence Match ( AT3G13445.1 )
(BLAST)

001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ

Arabidopsis Description

TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.