Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04996 | Canola | nucleus | 99.51 | 99.51 |
| Bra027434.1-P | Field mustard | nucleus | 81.37 | 83.0 |
| Bra011920.1-P | Field mustard | nucleus | 80.88 | 82.5 |
| Bra030855.1-P | Field mustard | nucleus | 79.9 | 81.5 |
| Bra005902.1-P | Field mustard | nucleus | 78.92 | 77.4 |
| Bra005905.1-P | Field mustard | nucleus | 67.16 | 76.54 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 71.08 | 70.05 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 17.16 | 33.02 |
| Zm00001d019598_P002 | Maize | nucleus | 38.73 | 26.16 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | EnsemblPlantsGene:Bra028725 | EnsemblPlants:Bra028725.1 | EnsemblPlants:Bra028725.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR012295 | UniProt:M4EIW0 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0002543188 |
Description
AT3G13445 (E=2e-088) TBP1, TFIID-1 | TBP1 (TATA BINDING PROTEIN 1); DNA binding / RNA polymerase II transcription factor/ binding
Coordinates
chrA02:-:2365309..2365923
Molecular Weight (calculated)
23201.6 Da
IEP (calculated)
10.055
GRAVY (calculated)
-0.037
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDDELQGST DPVDLSNHPS GLVPTLQNIV STVNLDCKID LKEIALKARN AEYNPKRFAA VIMRIREPKT TALIFASGRM VCTGAKTECF SKLAARKYAR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTFRAFENI YPVLTQFKKI
201: CIHR
101: IVQKLGFDAR FKDFKIQNIV ASCDVKFPIR LEILAVSVHR DFLSYEPEMF PGLIYRMREP KIVLLIFVSG KIVITGAKKR EDTFRAFENI YPVLTQFKKI
201: CIHR
001: MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKMRDE TYKAFENIYP VLSEFRKIQQ
Arabidopsis Description
TBP1TATA-box-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P28147]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.