Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P23210_001 | Banana | nucleus | 76.33 | 79.0 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 75.85 | 72.02 |
| CDY04996 | Canola | nucleus | 70.53 | 71.57 |
| Bra028725.1-P | Field mustard | nucleus | 70.05 | 71.08 |
| CDY14075 | Canola | nucleus | 69.57 | 70.59 |
| GSMUA_Achr10P... | Banana | nucleus | 67.63 | 67.31 |
| GSMUA_Achr7P01480_001 | Banana | cytosol, nucleus, plasma membrane | 74.4 | 66.96 |
| Bra005905.1-P | Field mustard | nucleus | 57.49 | 66.48 |
| Bra005902.1-P | Field mustard | nucleus | 66.67 | 66.35 |
| CDY09928 | Canola | cytosol, golgi, nucleus | 58.94 | 65.95 |
| CDX81013 | Canola | nucleus | 20.77 | 64.18 |
| CDY55771 | Canola | nucleus | 20.77 | 64.18 |
| CDY55768 | Canola | cytoskeleton, cytosol, nucleus | 52.17 | 61.36 |
| CDY55770 | Canola | mitochondrion | 16.43 | 55.74 |
| CDX81012 | Canola | mitochondrion | 16.43 | 55.74 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 76.33 | 55.63 |
| Zm00001d029737_P001 | Maize | nucleus, plasma membrane, plastid | 14.98 | 29.25 |
| Zm00001d019598_P002 | Maize | nucleus | 36.72 | 25.17 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G29890_001 | EnsemblPlants:GSMUA_Achr6P29890_001 | EnsemblPlants:GSMUA_Achr6T29890_001 | InterPro:IPR012295 | UniProt:M0TBD4 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 |
| InterPro:TBP | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI000295A22B | : | : |
Description
TATA-box-binding protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29890_001]
Coordinates
chr6:-:30026852..30030442
Molecular Weight (calculated)
23463.8 Da
IEP (calculated)
10.037
GRAVY (calculated)
-0.064
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQGSQGKQ LLSRHPSGVV FTIQNVVSTV NMDCKLDLKT IALLARNSEY NPKRFAAIIM RIREPKTTAL MFASGQMVCT GAKSEQQSKL AARKFARIVQ
101: KLGFPAKFKD FKIQNMLSSC DIKFPIRLEG LSYSHDAFCS YEPEIFPGLI YRMRQSRMVL LIFASGKIIL TGAKSEDDTH AAFENIYPVL TEFRKIQQWY
201: VFVCSLQ
101: KLGFPAKFKD FKIQNMLSSC DIKFPIRLEG LSYSHDAFCS YEPEIFPGLI YRMRQSRMVL LIFASGKIIL TGAKSEDDTH AAFENIYPVL TEFRKIQQWY
201: VFVCSLQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.