Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P23210_001 | Banana | nucleus | 81.25 | 84.5 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 81.25 | 77.52 |
| GSMUA_Achr7P01480_001 | Banana | cytosol, nucleus, plasma membrane | 78.85 | 71.3 |
| EER91582 | Sorghum | nucleus | 74.52 | 71.1 |
| Os10t0432300-01 | Rice | nucleus | 75.0 | 69.96 |
| TraesCS1A01G139600.1 | Wheat | nucleus | 76.92 | 68.67 |
| TraesCS1B01G151700.1 | Wheat | nucleus | 76.92 | 68.38 |
| GSMUA_Achr6P29890_001 | Banana | nucleus | 67.31 | 67.63 |
| Zm00001d027501_P001 | Maize | mitochondrion, nucleus | 46.15 | 66.67 |
| KXG38188 | Sorghum | mitochondrion, nucleus | 68.27 | 60.68 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 80.77 | 59.15 |
| HORVU1Hr1G035600.1 | Barley | nucleus, plastid | 76.92 | 53.51 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr10G08540_001 | EnsemblPlants:GSMUA_Achr10P08540_001 | EnsemblPlants:GSMUA_Achr10T08540_001 | InterPro:IPR012295 | UniProt:M0RGI0 |
| HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic | UniParc:UPI0002968627 |
Description
TATA-box-binding protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G08540_001]
Coordinates
chr10:+:18492161..18497188
Molecular Weight (calculated)
23326.6 Da
IEP (calculated)
9.731
GRAVY (calculated)
-0.015
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MENMVGQSLE ESQPVDLSLH PSGIVPRFQN IVSTVNLDCR LDLPAIAIQA RNAEYNPKRF AAVIMRIRDP KTTALVFASG KMVCTGAKSE QQSNLAARKY
101: ARIIQKIGFP VKFENFKIQN IVGSCDVKFP IRLEGLAYSH QSFCTYEPEL FPGLIYRMKQ PKVVLLIFVS GKIVLTGAKV RDDIYTAFES IYPVLKEFMK
201: ISTTQSGQ
101: ARIIQKIGFP VKFENFKIQN IVGSCDVKFP IRLEGLAYSH QSFCTYEPEL FPGLIYRMKQ PKVVLLIFVS GKIVLTGAKV RDDIYTAFES IYPVLKEFMK
201: ISTTQSGQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.