Factsheet for HORVU1Hr1G035600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G139600.1	Wheat	nucleus	76.92	98.71
TraesCS1B01G151700.1	Wheat	nucleus	76.92	98.29
EER91582	Sorghum	nucleus	60.87	83.49
Os10t0432300-01	Rice	nucleus	62.21	83.41
HORVU5Hr1G006000.6	Barley	cytosol, extracellular, nucleus	54.85	81.19
GSMUA_Achr10P...	Banana	nucleus	53.51	76.92
Zm00001d027501_P001	Maize	mitochondrion, nucleus	34.11	70.83
KXG38188	Sorghum	mitochondrion, nucleus	53.85	68.8
HORVU4Hr1G002400.5	Barley	golgi	60.54	53.71

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	UniProt:A0A287F4A7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G035600	EnsemblPlants:HORVU1Hr1G035600.1	InterPro:IPR012295	HAMAP:MF_00408
PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945
InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI000B46B912	SEG:seg

Description

No Description!

Coordinates

chrchr1H:-:236791524..236794058

Molecular Weight (calculated)

32494.8 Da

IEP (calculated)

10.298

GRAVY (calculated)

-0.022

Length

299 amino acids

Sequence
(BLAST)

001: LFANPPSNPN LHPDPPPPPP VHRPNLPSFH SLPSHRFLLS IKPATFENLC LRIGILRQFL DRQIDRMAAA AVDPMVLGLG TSGGASGSGV AGGGVARAGG
101: GGTVMEGAQP VDLARHPSGI VPVLQNIVST VNLDCRLDLK QIALQARNAE YNPKRFAAVI MRIRDPKTTA LIFASGKMVC TGAKSEEHSK LAARKYARIV
201: QKLGFPATFK DFKIQNIVAS CDVKFPIRLE GLAYSHGAFS SYEPELFPGL IYRMKQPKIV LLVFVSGKIV LTGAKVRDEI YAAFENIYPV LTEYRKSQQ

Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.