CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16412	Sorghum	nucleus	79.36	86.5
OQU91240	Sorghum	nucleus	70.64	86.03
Os10t0432300-01	Rice	nucleus	81.65	79.82
TraesCS1A01G139600.1	Wheat	nucleus	83.03	77.68
TraesCS1B01G151700.1	Wheat	nucleus	83.03	77.35
GSMUA_Achr10P...	Banana	nucleus	71.1	74.52
KXG38188	Sorghum	mitochondrion, nucleus	76.15	70.94
HORVU1Hr1G035600.1	Barley	nucleus, plastid	83.49	60.87

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:8064878	UniProt:C5X0L0	EnsemblPlants:EER91582
ProteinID:EER91582	ProteinID:EER91582.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR012295	HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126
PANTHER:PTHR10126:SF36	EnsemblPlantsGene:SORBI_3001G240600	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf
InterPro:TBP_eukaryotic	UniParc:UPI0001A81FCB	RefSeq:XP_002464584.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:24741034..24743895

Molecular Weight (calculated)

23681.3 Da

IEP (calculated)

10.197

GRAVY (calculated)

0.094

Length

218 amino acids

Sequence
(BLAST)

001: MAALGMSGGA IGVGAGGGGA AAVVDAARPV DLARHPSGIV PALQNIVSTV NLDCQLDLKM IALQARNAEY NPKRFAAVIM RIREPKTTAL VFASGKMVCT
101: GAKSEEHSKL AARKYARIVQ KLGYPAKFKD FKIQNMVGSC DVKFPIRLEG LAFSHGAFSN YEPELFPGLI YRMKNPKIVL LIFVSGKIVL TGAKVREEIY
201: TAFENIYPVL TEYRKCQK

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.