CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90111
EER93074
KXG19969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	EER90111	AT1G32750.1	17340043
AT1G55520.1	EER93074	AT4G17750.1	9801140
AT1G55520.1	KXG19969	AT5G23080.1	16024589
AT3G13445.1	EER90111	AT1G32750.1	17340043
AT3G13445.1	EER93074	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94816	Soybean	cytosol, mitochondrion, nucleus	59.0	97.52
KRH40768	Soybean	nucleus	96.5	96.5
GSMUA_Achr6P23210_001	Banana	nucleus	96.5	96.5
TraesCS4A01G298000.1	Wheat	nucleus	96.5	96.5
TraesCS4D01G014000.2	Wheat	nucleus	96.5	96.5
KRH00416	Soybean	nucleus	96.0	96.0
TraesCS5D01G027800.3	Wheat	nucleus	95.5	95.5
TraesCS5A01G022000.1	Wheat	nucleus	95.5	95.5
KRH65451	Soybean	nucleus	95.0	95.0
KRH08285	Soybean	nucleus	95.0	95.0
Os03t0657000-01	Rice	nucleus	96.0	94.58
CDY26099	Canola	nucleus	94.5	94.5
CDY08246	Canola	nucleus	94.5	94.5
Bra011920.1-P	Field mustard	nucleus	94.5	94.5
Solyc01g028930.2.1	Tomato	nucleus	95.5	94.09
KRG94819	Soybean	nucleus	37.0	93.67
TraesCS5B01G018500.1	Wheat	nucleus	94.0	93.53
AT1G55520.1	Thale cress	nucleus	93.0	93.0
CDY10555	Canola	nucleus	92.5	92.5
CDY02435	Canola	nucleus	92.5	92.5
Bra030855.1-P	Field mustard	nucleus	92.5	92.5
OQU91240	Sorghum	nucleus	82.5	92.18
AT3G13445.1	Thale cress	nucleus	91.5	91.5
Os12t0580300-01	Rice	nucleus	95.0	91.35
Bra027434.1-P	Field mustard	nucleus	90.5	90.5
Zm00001d033472_P004	Maize	nucleus	97.0	90.23
GSMUA_Achr1P26830_001	Banana	nucleus	96.0	88.07
GSMUA_Achr7P01480_001	Banana	cytosol, nucleus, plasma membrane	95.5	83.04
CDY56078	Canola	nucleus	53.0	82.17
VIT_06s0004g00180.t01	Wine grape	nucleus	96.5	81.09
EER91582	Sorghum	nucleus	86.5	79.36
TraesCS4B01G015700.2	Wheat	nucleus	88.0	78.57
KRH69926	Soybean	cytosol, nucleus, plastid	43.0	69.92
GSMUA_Achr5P08990_001	Banana	nucleus	96.0	67.61
KXG38188	Sorghum	mitochondrion, nucleus	78.0	66.67
HORVU4Hr1G002400.5	Barley	golgi	97.0	57.57
CDY23601	Canola	mitochondrion, nucleus, plastid	90.5	56.92
Zm00001d013631_P001	Maize	nucleus	96.0	48.98

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:8086107	UniProt:C5YSH9	EnsemblPlants:EES16412
ProteinID:EES16412	ProteinID:EES16412.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR012295	HAMAP:MF_00408	PFAM:PF00352	PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126
PANTHER:PTHR10126:SF36	EnsemblPlantsGene:SORBI_3008G179700	SUPFAM:SSF55945	InterPro:TBP	InterPro:TBP_CS	InterPro:TBP_dom_sf
InterPro:TBP_eukaryotic	UniParc:UPI0001A881FE	RefSeq:XP_002442574.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:61310664..61314711

Molecular Weight (calculated)

22291.4 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.050

Length

200 amino acids

Sequence
(BLAST)

001: MAEPALDGSQ PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE TYTAFENIYP VLTEFRKVQQ

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.