Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08246 | Canola | nucleus | 97.0 | 97.0 |
| CDY26099 | Canola | nucleus | 97.0 | 97.0 |
| Bra011920.1-P | Field mustard | nucleus | 96.5 | 96.5 |
| Bra030855.1-P | Field mustard | nucleus | 95.0 | 95.0 |
| CDY02435 | Canola | nucleus | 95.0 | 95.0 |
| CDY10555 | Canola | nucleus | 95.0 | 95.0 |
| GSMUA_Achr6P23210_001 | Banana | nucleus | 94.5 | 94.5 |
| AT3G13445.1 | Thale cress | nucleus | 93.5 | 93.5 |
| Solyc01g028930.2.1 | Tomato | nucleus | 94.5 | 93.1 |
| EES16412 | Sorghum | nucleus | 93.0 | 93.0 |
| KRH08285 | Soybean | nucleus | 92.5 | 92.5 |
| TraesCS4D01G014000.2 | Wheat | nucleus | 92.5 | 92.5 |
| TraesCS4A01G298000.1 | Wheat | nucleus | 92.5 | 92.5 |
| KRH65451 | Soybean | nucleus | 92.5 | 92.5 |
| KRH40768 | Soybean | nucleus | 92.5 | 92.5 |
| KRH00416 | Soybean | nucleus | 92.0 | 92.0 |
| TraesCS5A01G022000.1 | Wheat | nucleus | 92.0 | 92.0 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 92.0 | 92.0 |
| TraesCS5B01G018500.1 | Wheat | nucleus | 91.0 | 90.55 |
| Os03t0657000-01 | Rice | nucleus | 91.5 | 90.15 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 95.0 | 87.16 |
| Os12t0580300-01 | Rice | nucleus | 90.5 | 87.02 |
| CDY56078 | Canola | nucleus | 55.5 | 86.05 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 93.0 | 78.15 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 84.5 | 75.45 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 93.5 | 65.85 |
| HORVU4Hr1G002400.5 | Barley | golgi | 92.5 | 54.9 |
| Zm00001d013856_P001 | Maize | nucleus | 41.0 | 52.56 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | EntrezGene:841999 | UniProt:A0A178WDQ6 | ProteinID:AAD10645.1 |
| EMBL:AB493506 | ProteinID:AEE33257.1 | ProteinID:AEE33258.1 | EMBL:AK227470 | ProteinID:ANM58687.1 | ArrayExpress:AT1G55520 |
| EnsemblPlantsGene:AT1G55520 | RefSeq:AT1G55520 | TAIR:AT1G55520 | RefSeq:AT1G55520-TAIR-G | EnsemblPlants:AT1G55520.1 | TAIR:AT1G55520.1 |
| EMBL:AY463626 | EMBL:BT006488 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0017025 | InterPro:IPR012295 | HAMAP:MF_00408 | RefSeq:NP_001321103.1 | RefSeq:NP_175948.1 |
| RefSeq:NP_849812.1 | ProteinID:OAP15172.1 | UniProt:P28148 | PFAM:PF00352 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00686 | ScanProsite:PS00351 | PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 |
| SUPFAM:SSF55945 | InterPro:TBP | Symbol:TBP2 | InterPro:TBP_CS | InterPro:TBP_dom_sf | InterPro:TBP_eukaryotic |
| UniParc:UPI0000136C1B | EMBL:X54995 | : | : | : | : |
Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
Coordinates
chr1:-:20725470..20728091
Molecular Weight (calculated)
22397.7 Da
IEP (calculated)
10.312
GRAVY (calculated)
-0.050
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.