Factsheet for Os12t0580300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854500-01
Os06t0489200-01
Os06t0645700-01
Os06t0645800-01
Os06t0645901-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	Os06t0645700-01	AT1G32750.1	17340043
AT1G55520.1	Os06t0645800-01	AT1G32750.1	17340043
AT1G55520.1	Os06t0645901-00	AT1G32750.1	17340043
AT1G55520.1	Os03t0854500-01	AT4G17750.1	9801140
AT1G55520.1	Os06t0489200-01	AT5G23080.1	16024589
AT3G13445.1	Os06t0645700-01	AT1G32750.1	17340043
AT3G13445.1	Os06t0645800-01	AT1G32750.1	17340043
AT3G13445.1	Os06t0645901-00	AT1G32750.1	17340043
AT3G13445.1	Os03t0854500-01	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0657000-01	Rice	nucleus	95.67	98.03
KRG94816	Soybean	cytosol, mitochondrion, nucleus	56.73	97.52
TraesCS4A01G298000.1	Wheat	nucleus	92.79	96.5
TraesCS4D01G014000.2	Wheat	nucleus	92.79	96.5
TraesCS5A01G022000.1	Wheat	nucleus	92.31	96.0
TraesCS5D01G027800.3	Wheat	nucleus	92.31	96.0
TraesCS5B01G018500.1	Wheat	nucleus	92.31	95.52
EES16412	Sorghum	nucleus	91.35	95.0
KRH65451	Soybean	nucleus	90.87	94.5
KRH08285	Soybean	nucleus	90.87	94.5
KRH40768	Soybean	nucleus	90.87	94.5
KRH00416	Soybean	nucleus	90.38	94.0
GSMUA_Achr6P23210_001	Banana	nucleus	89.9	93.5
Solyc01g028930.2.1	Tomato	nucleus	90.38	92.61
CDY10555	Canola	nucleus	87.98	91.5
CDY02435	Canola	nucleus	87.98	91.5
Bra030855.1-P	Field mustard	nucleus	87.98	91.5
CDY26099	Canola	nucleus	87.5	91.0
CDY08246	Canola	nucleus	87.5	91.0
Bra011920.1-P	Field mustard	nucleus	87.5	91.0
AT1G55520.1	Thale cress	nucleus	87.02	90.5
AT3G13445.1	Thale cress	nucleus	86.06	89.5
Bra027434.1-P	Field mustard	nucleus	85.58	89.0
KRG94819	Soybean	nucleus	33.65	88.61
Zm00001d033472_P004	Maize	nucleus	90.38	87.44
GSMUA_Achr1P26830_001	Banana	nucleus	89.42	85.32
GSMUA_Achr7P01480_001	Banana	cytosol, nucleus, plasma membrane	89.42	80.87
CDY56078	Canola	nucleus	50.0	80.62
VIT_06s0004g00180.t01	Wine grape	nucleus	90.87	79.41
Os10t0432300-01	Rice	nucleus	84.62	78.92
TraesCS4B01G015700.2	Wheat	nucleus	84.13	78.12
KRH69926	Soybean	cytosol, nucleus, plastid	39.9	67.48
GSMUA_Achr5P08990_001	Banana	nucleus	88.46	64.79
HORVU4Hr1G002400.5	Barley	golgi	93.75	57.86
CDY23601	Canola	mitochondrion, nucleus, plastid	85.58	55.97
Zm00001d013631_P001	Maize	nucleus	90.38	47.96

Protein Annotations

MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EntrezGene:4352633	ProteinID:ABA99084.1	EMBL:AK102871
ProteinID:BAF30147.1	ProteinID:BAT17809.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR012295	HAMAP:MF_00408	EnsemblPlantsGene:Os12g0580300	EnsemblPlants:Os12t0580300-01	PFAM:PF00352	PRINTS:PR00686
ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	UniProt:Q2QN41	SUPFAM:SSF55945	InterPro:TBP
InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI0000680D64	RefSeq:XP_015618516.1	SEG:seg

Description

Similar to TATA-binding protein TBP2. (Os12t0580300-01)

Coordinates

chr12:+:24031221..24035687

Molecular Weight (calculated)

22898.1 Da

IEP (calculated)

10.041

GRAVY (calculated)

0.052

Length

208 amino acids

Sequence
(BLAST)

001: MAAAEAAAEA AAALEGSEPV DLVKHPSGII PTLQNIVSTV NLDCKLDLKA IALQARNAEY NPKRFAAVIM RIREPKTTAL IFASGKMVCT GAKSEQQSKL
101: AARKYARIIQ KLGFAAKFKD FKIQNIVGSC DVKFPIRLEG LAYSHGAFSS YEPELFPGLI YRMKQPKIVL LIFVSGKIVL TGAKVRDETY TAFENIYPVL
201: TEFRKVQQ

Best Arabidopsis Sequence Match ( AT1G55520.4 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.