Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G298000.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5D01G027800.3 | Wheat | nucleus | 98.0 | 98.0 |
| KRG94816 | Soybean | cytosol, mitochondrion, nucleus | 59.0 | 97.52 |
| EES16412 | Sorghum | nucleus | 96.5 | 96.5 |
| Os03t0657000-01 | Rice | nucleus | 97.5 | 96.06 |
| KRH40768 | Soybean | nucleus | 95.5 | 95.5 |
| KRH00416 | Soybean | nucleus | 95.0 | 95.0 |
| GSMUA_Achr6P23210_001 | Banana | nucleus | 95.0 | 95.0 |
| KRH65451 | Soybean | nucleus | 94.5 | 94.5 |
| KRH08285 | Soybean | nucleus | 94.5 | 94.5 |
| CDY26099 | Canola | nucleus | 94.0 | 94.0 |
| CDY08246 | Canola | nucleus | 94.0 | 94.0 |
| Bra011920.1-P | Field mustard | nucleus | 94.0 | 94.0 |
| Solyc01g028930.2.1 | Tomato | nucleus | 95.0 | 93.6 |
| CDY10555 | Canola | nucleus | 93.0 | 93.0 |
| CDY02435 | Canola | nucleus | 93.0 | 93.0 |
| Bra030855.1-P | Field mustard | nucleus | 93.0 | 93.0 |
| Os12t0580300-01 | Rice | nucleus | 96.5 | 92.79 |
| AT1G55520.1 | Thale cress | nucleus | 92.5 | 92.5 |
| KRG94819 | Soybean | nucleus | 36.0 | 91.14 |
| Bra027434.1-P | Field mustard | nucleus | 91.0 | 91.0 |
| AT3G13445.1 | Thale cress | nucleus | 91.0 | 91.0 |
| Zm00001d033472_P004 | Maize | nucleus | 97.0 | 90.23 |
| GSMUA_Achr1P26830_001 | Banana | nucleus | 95.5 | 87.61 |
| CDY56078 | Canola | nucleus | 53.5 | 82.95 |
| GSMUA_Achr7P01480_001 | Banana | cytosol, nucleus, plasma membrane | 94.5 | 82.17 |
| TraesCS4B01G015700.2 | Wheat | nucleus | 91.0 | 81.25 |
| VIT_06s0004g00180.t01 | Wine grape | nucleus | 96.0 | 80.67 |
| KRH69926 | Soybean | cytosol, nucleus, plastid | 43.0 | 69.92 |
| GSMUA_Achr5P08990_001 | Banana | nucleus | 93.5 | 65.85 |
| HORVU4Hr1G002400.5 | Barley | golgi | 99.5 | 59.05 |
| CDY23601 | Canola | mitochondrion, nucleus, plastid | 91.0 | 57.23 |
| Zm00001d013631_P001 | Maize | nucleus | 96.0 | 48.98 |
Protein Annotations
| MapMan:15.3.5.3.1 | MapMan:15.4.1 | Gene3D:3.30.310.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR012295 | HAMAP:MF_00408 | PFAM:PF00352 | PRINTS:PR00686 | ScanProsite:PS00351 |
| PANTHER:PTHR10126 | PANTHER:PTHR10126:SF36 | SUPFAM:SSF55945 | InterPro:TBP | InterPro:TBP_CS | InterPro:TBP_dom_sf |
| InterPro:TBP_eukaryotic | EnsemblPlantsGene:TraesCS4D01G014000 | EnsemblPlants:TraesCS4D01G014000.2 | TIGR:cd04516 | : | : |
Description
No Description!
Coordinates
chr4D:+:6515649..6519494
Molecular Weight (calculated)
22329.5 Da
IEP (calculated)
10.138
GRAVY (calculated)
-0.045
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEATLEGSE PVDLSKHPSG IIPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVREE TYTAFENIYP VLTEFRKVQQ
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVREE TYTAFENIYP VLTEFRKVQQ
001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ
Arabidopsis Description
TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.