CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03843
KRH07474
KRH39566
KRH39697
KRH56717
KRH62676
KRH74387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55520.1	KRH39697	AT1G32750.1	17340043
AT1G55520.1	KRH62676	AT1G32750.1	17340043
AT1G55520.1	KRH07474	AT4G17750.1	9801140
AT1G55520.1	KRH39566	AT4G17750.1	9801140
AT1G55520.1	KRH74387	AT4G17750.1	9801140
AT1G55520.1	KRH03843	AT5G23080.1	16024589
AT1G55520.1	KRH56717	AT5G23080.1	16024589
AT3G13445.1	KRH39697	AT1G32750.1	17340043
AT3G13445.1	KRH62676	AT1G32750.1	17340043
AT3G13445.1	KRH07474	AT4G17750.1	9801140
AT3G13445.1	KRH39566	AT4G17750.1	9801140
AT3G13445.1	KRH74387	AT4G17750.1	9801140

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94819	Soybean	nucleus	39.5	100.0
KRH00416	Soybean	nucleus	99.5	99.5
KRG94816	Soybean	cytosol, mitochondrion, nucleus	60.0	99.17
KRH65451	Soybean	nucleus	96.5	96.5
KRH08285	Soybean	nucleus	96.5	96.5
EES16412	Sorghum	nucleus	96.5	96.5
Solyc01g028930.2.1	Tomato	nucleus	97.0	95.57
TraesCS5D01G027800.3	Wheat	nucleus	95.5	95.5
GSMUA_Achr6P23210_001	Banana	nucleus	95.5	95.5
TraesCS4A01G298000.1	Wheat	nucleus	95.5	95.5
TraesCS5A01G022000.1	Wheat	nucleus	95.5	95.5
TraesCS4D01G014000.2	Wheat	nucleus	95.5	95.5
Os03t0657000-01	Rice	nucleus	95.5	94.09
TraesCS5B01G018500.1	Wheat	nucleus	94.0	93.53
CDY26099	Canola	nucleus	93.5	93.5
CDY08246	Canola	nucleus	93.5	93.5
Bra011920.1-P	Field mustard	nucleus	93.5	93.5
CDY10555	Canola	nucleus	93.0	93.0
CDY02435	Canola	nucleus	93.0	93.0
Bra030855.1-P	Field mustard	nucleus	93.0	93.0
AT1G55520.1	Thale cress	nucleus	92.5	92.5
AT3G13445.1	Thale cress	nucleus	91.0	91.0
Os12t0580300-01	Rice	nucleus	94.5	90.87
Bra027434.1-P	Field mustard	nucleus	90.5	90.5
GSMUA_Achr1P26830_001	Banana	nucleus	95.0	87.16
CDY56078	Canola	nucleus	54.0	83.72
VIT_06s0004g00180.t01	Wine grape	nucleus	96.0	80.67
TraesCS4B01G015700.2	Wheat	nucleus	86.5	77.23
KRH69926	Soybean	cytosol, nucleus, plastid	44.5	72.36
GSMUA_Achr5P08990_001	Banana	nucleus	94.0	66.2
HORVU4Hr1G002400.5	Barley	golgi	96.0	56.97
CDY23601	Canola	mitochondrion, nucleus, plastid	90.5	56.92

Protein Annotations

EntrezGene:100810845	MapMan:15.3.5.3.1	MapMan:15.4.1	Gene3D:3.30.310.10	EMBL:ACUP02006054	EMBL:ACUP02006055
EnsemblPlantsGene:GLYMA_09G276900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1L726
InterPro:IPR012295	EnsemblPlants:KRH40768	ProteinID:KRH40768	ProteinID:KRH40768.1	HAMAP:MF_00408	PFAM:PF00352
PRINTS:PR00686	ScanProsite:PS00351	PANTHER:PTHR10126	PANTHER:PTHR10126:SF36	SUPFAM:SSF55945	InterPro:TBP
InterPro:TBP_CS	InterPro:TBP_dom_sf	InterPro:TBP_eukaryotic	UniParc:UPI0001CA9300	:	:

Description

hypothetical protein

Coordinates

chr9:-:49235162..49239842

Molecular Weight (calculated)

22386.5 Da

IEP (calculated)

10.228

GRAVY (calculated)

-0.112

Length

200 amino acids

Sequence
(BLAST)

001: MAEQALEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLEL KSIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI
101: IQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE TYTAFENIYP VLTEFRKNQQ

Best Arabidopsis Sequence Match ( AT1G55520.1 )
(BLAST)

001: MADQGTEGSQ PVDLTKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV IMRIREPKTT ALIFASGKMV CTGAKSEHLS KLAARKYARI
101: VQKLGFPAKF KDFKIQNIVG SCDVKFPIRL EGLAYSHSAF SSYEPELFPG LIYRMKLPKI VLLIFVSGKI VITGAKMREE TYTAFENIYP VLREFRKVQQ

Arabidopsis Description

TBP2TATA-box-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P28148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.