CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95088
KRH00416
KRH01631
KRH08285
KRH33063
KRH40768
KRH50248
KRH65451
KRH70484
KRH71170
KRH71707

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	KRH00416	AT1G55520.1	9801140
AT4G17750.1	KRH08285	AT1G55520.1	9801140
AT4G17750.1	KRH40768	AT1G55520.1	9801140
AT4G17750.1	KRH65451	AT1G55520.1	9801140
AT4G17750.1	KRG95088	AT2G41140.1	18466301
AT4G17750.1	KRH33063	AT2G41140.1	18466301
AT4G17750.1	KRH71707	AT2G41140.1	18466301
AT4G17750.1	KRH01631	AT3G12580.1	11807141
AT4G17750.1	KRH70484	AT3G12580.1	11807141
AT4G17750.1	KRH00416	AT3G13445.1	9801140
AT4G17750.1	KRH08285	AT3G13445.1	9801140
AT4G17750.1	KRH40768	AT3G13445.1	9801140
AT4G17750.1	KRH65451	AT3G13445.1	9801140
AT4G17750.1	KRH50248	AT3G19100.1	18466301
AT4G17750.1	KRH71170	AT3G19100.1	18466301

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74387	Soybean	nucleus	71.96	74.9
KRH39566	Soybean	nucleus	71.18	72.6
VIT_02s0012g01810.t01	Wine grape	nucleus	65.29	67.14
PGSC0003DMT400046000	Potato	nucleus	57.45	57.68
GSMUA_Achr4P04500_001	Banana	nucleus	49.41	57.4
Solyc08g005170.2.1	Tomato	nucleus	58.24	56.36
CDX78797	Canola	nucleus	45.29	53.72
Bra040179.1-P	Field mustard	nucleus	45.1	53.24
GSMUA_Achr3P27600_001	Banana	nucleus	44.31	53.05
AT1G32330.1	Thale cress	nucleus	50.39	52.99
CDY60785	Canola	nucleus	45.29	52.86
Solyc08g076590.2.1	Tomato	nucleus	49.02	51.02
Os03t0854500-01	Rice	nucleus	50.59	50.99
Bra023258.1-P	Field mustard	nucleus	48.24	50.51
PGSC0003DMT400038381	Potato	nucleus	49.22	50.4
CDX93842	Canola	nucleus	48.04	50.31
GSMUA_Achr4P17040_001	Banana	nucleus	47.65	49.9
CDY01288	Canola	nucleus	47.84	49.59
AT4G17750.1	Thale cress	nucleus	47.65	49.09
KRH77766	Soybean	nucleus	44.51	48.92
TraesCS4A01G322300.1	Wheat	nucleus	49.8	48.75
TraesCS5D01G553300.1	Wheat	nucleus	49.8	48.66
EER93074	Sorghum	nucleus	49.61	48.01
TraesCS5B01G556200.1	Wheat	nucleus	49.61	47.83
Zm00001d034886_P001	Maize	nucleus	49.22	47.63
KRH27709	Soybean	nucleus	43.14	47.41
Bra035507.1-P	Field mustard	nucleus	39.02	46.6
Zm00001d012823_P001	Maize	nucleus	48.04	44.06
KRG91367	Soybean	nucleus	31.57	43.99
HORVU5Hr1G123770.1	Barley	nucleus	49.41	43.9
KRH31657	Soybean	nucleus	28.63	43.32
CDY44649	Canola	nucleus	39.8	42.74
KRG95588	Soybean	nucleus	30.39	41.89
KRH35452	Soybean	nucleus	29.41	40.98
KRH15573	Soybean	nucleus	29.02	40.66
KRH05436	Soybean	nucleus	27.84	40.0
KRH32059	Soybean	nucleus	26.67	39.88
KRH67266	Soybean	nucleus	29.41	38.86
KRH61515	Soybean	nucleus	27.25	37.37
CDX84097	Canola	nucleus	18.24	34.57
KRH39283	Soybean	nucleus	20.59	32.81
KRH67848	Soybean	nucleus	26.27	31.68
KRH11063	Soybean	nucleus	24.12	31.38
KRH59030	Soybean	nucleus	24.71	31.34
KRH02689	Soybean	nucleus	24.51	30.94
KRH42919	Soybean	nucleus	24.31	30.85
KRH21206	Soybean	nucleus	23.33	30.36
KRH19208	Soybean	nucleus	24.12	30.15
KRH20029	Soybean	nucleus	26.67	29.96
KRH32651	Soybean	nucleus	26.86	29.78
KRH58845	Soybean	nucleus	27.84	29.65
KRH42748	Soybean	nucleus	27.65	29.56

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	EMBL:ACUP02010018	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G091800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
UniProt:I1MMC1	InterPro:IPR036388	EnsemblPlants:KRH07474	ProteinID:KRH07474	ProteinID:KRH07474.1	PFAM:PF00447
PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI00023D6B99	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:14510955..14516033

Molecular Weight (calculated)

56351.9 Da

IEP (calculated)

4.676

GRAVY (calculated)

-0.591

Length

510 amino acids

Sequence
(BLAST)

001: MDGRASSSVG GEASPAPAPV PITNANAPPP FLSKTYEMVE DPSTDSIVSW SPTNNSFVVW NPPEFARDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDRWE
101: FANEGFLRGQ KHLLKTITRR KPAHGHNQQA QQAHGQSSSV GACVEVGKFG LEEEVEILKR DKNVLMQELV RLRQQQQATD NQLQSMVQRL QGMEQRQQQM
201: MSFLAKAVQS PGFLAQFVQQ QNESSRRITE ANKKRRLKQE GIGEMEHTAA SDGQIVKYQP LINEAAKAML RQMMKLDTSR LESFSNNADN YLIGDHSSSS
301: GATDRGNSLS RTSGVTLQVV PLTTIQSSHI PSATGIGDDP STGKSEILST PQVVACDEVT KAQYSNVNVS VGESNAPAIP VTQTDEIMRD LSTIPDIVAG
401: NILDIPQENY MAPETGGEGY MDPTSFGVNV SLPIDFDSIS PEADIDDLLN NPHFWDDILR TPVSEEIDTN DAEVFKENEV QPMENGLDKS QNMDQLTEQM
501: GLLSSDAKRI

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.