Factsheet for Zm00001d012823_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000221_P001
Zm00001d006885_P002
Zm00001d007029_P001
Zm00001d010529_P001
Zm00001d012420_P001
Zm00001d013856_P001
Zm00001d022166_P001
Zm00001d022305_P001
Zm00001d028630_P005
Zm00001d029264_P004
Zm00001d042922_P002
Zm00001d047428_P001
Zm00001d048687_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17750.1	Zm00001d013856_P001	AT1G55520.1	9801140
AT4G17750.1	Zm00001d007029_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d022305_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d029264_P004	AT2G41140.1	18466301
AT4G17750.1	Zm00001d047428_P001	AT2G41140.1	18466301
AT4G17750.1	Zm00001d010529_P001	AT3G12580.1	11807141
AT4G17750.1	Zm00001d012420_P001	AT3G12580.1	11807141
AT4G17750.1	Zm00001d028630_P005	AT3G12580.1	11807141
AT4G17750.1	Zm00001d042922_P002	AT3G12580.1	11807141
AT4G17750.1	Zm00001d013856_P001	AT3G13445.1	9801140
AT4G17750.1	Zm00001d000221_P001	AT3G19100.1	18466301
AT4G17750.1	Zm00001d006885_P002	AT3G19100.1	18466301
AT4G17750.1	Zm00001d022166_P001	AT3G19100.1	18466301
AT4G17750.1	Zm00001d048687_P002	AT5G02500.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93074	Sorghum	nucleus	78.96	83.3
Zm00001d034886_P001	Maize	nucleus	75.9	80.08
Os03t0854500-01	Rice	nucleus	67.63	74.31
TraesCS4A01G322300.1	Wheat	nucleus	65.11	69.48
TraesCS5D01G553300.1	Wheat	nucleus	64.75	68.97
TraesCS5B01G556200.1	Wheat	nucleus	64.93	68.24
HORVU5Hr1G123770.1	Barley	nucleus	63.85	61.85
GSMUA_Achr4P04500_001	Banana	nucleus	45.32	57.4
GSMUA_Achr3P27600_001	Banana	nucleus	40.29	52.58
VIT_02s0012g01810.t01	Wine grape	nucleus	44.6	50.0
KRH07474	Soybean	nucleus	44.06	48.04
KRH74387	Soybean	nucleus	42.27	47.96
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	44.06	47.85
KRH77766	Soybean	nucleus	39.75	47.63
PGSC0003DMT400046000	Potato	nucleus	43.35	47.44
KRH39566	Soybean	nucleus	42.45	47.2
CDX85486	Canola	nucleus	37.41	47.06
CDY38085	Canola	nucleus	36.69	46.47
Bra023584.1-P	Field mustard	nucleus	36.87	46.38
Solyc03g097120.2.1	Tomato	nucleus	40.83	46.23
Solyc08g005170.2.1	Tomato	nucleus	43.7	46.11
AT5G16820.2	Thale cress	nucleus	39.75	45.95
KRH27709	Soybean	nucleus	38.31	45.91
Bra032023.1-P	Field mustard	nucleus	37.41	45.61
CDX78797	Canola	nucleus	35.25	45.58
Bra040179.1-P	Field mustard	nucleus	35.25	45.37
PGSC0003DMT400008199	Potato	nucleus	40.11	45.33
Bra021381.1-P	Field mustard	nucleus	36.87	45.15
CDY60785	Canola	nucleus	35.43	45.08
CDY58547	Canola	nucleus	36.69	44.93
AT3G02990.1	Thale cress	nucleus	37.41	44.44
CDX92026	Canola	nucleus	35.79	44.42
AT1G32330.1	Thale cress	nucleus	38.67	44.33
PGSC0003DMT400038381	Potato	nucleus	39.57	44.18
Bra001071.1-P	Field mustard	nucleus	35.79	43.93
CDX74228	Canola	nucleus	35.79	43.74
Solyc08g076590.2.1	Tomato	nucleus	38.49	43.67
CDY28731	Canola	nucleus	33.81	43.12
CDX93842	Canola	nucleus	37.41	42.71
Bra023258.1-P	Field mustard	nucleus	37.41	42.71
CDY16977	Canola	nucleus	33.63	42.4
CDY01288	Canola	nucleus	37.23	42.07
AT4G17750.1	Thale cress	nucleus	36.87	41.41
PGSC0003DMT400069550	Potato	nucleus	35.61	41.16
Solyc06g072750.2.1	Tomato	nucleus	35.61	41.08
Bra008593.1-P	Field mustard	nucleus	35.43	40.79
CDX69418	Canola	nucleus	35.43	40.45
Zm00001d032923_P002	Maize	nucleus	25.9	40.34
Zm00001d018941_P001	Maize	nucleus	26.44	39.2
Bra035507.1-P	Field mustard	nucleus	29.86	38.88
CDY44649	Canola	nucleus	31.47	36.84
Zm00001d043536_P001	Maize	nucleus	16.37	36.55
Zm00001d016255_P001	Maize	nucleus	16.55	35.8
Zm00001d046299_P001	Maize	nucleus	17.09	35.58
Zm00001d033987_P001	Maize	nucleus	23.74	35.58
Zm00001d027757_P001	Maize	nucleus	22.84	33.07
Zm00001d046204_P001	Maize	nucleus	20.68	31.51
Zm00001d044168_P001	Maize	nucleus	18.7	31.42
Zm00001d012749_P001	Maize	nucleus	23.74	30.48
Zm00001d011406_P001	Maize	nucleus	20.14	28.94
Zm00001d048041_P004	Maize	nucleus	23.38	28.76
Zm00001d010812_P001	Maize	nucleus	22.48	27.84
CDX84097	Canola	nucleus	13.13	27.14
Zm00001d016674_P001	Maize	nucleus	24.64	26.97
Zm00001d038746_P001	Maize	nucleus	22.66	26.87
Zm00001d044259_P001	Maize	plastid	16.73	24.67
Zm00001d016520_P001	Maize	nucleus	23.38	24.62
Zm00001d034433_P003	Maize	nucleus	26.26	23.51

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	UniProt:A0A1D6GD30	ProteinID:AQK61530.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388
PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415	SUPFAM:SSF46785
UniParc:UPI000842AA99	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d012823	EnsemblPlants:Zm00001d012823_P001	EnsemblPlants:Zm00001d012823_T001
SEG:seg	:	:	:	:	:

Description

HSF-transcription factor 22Heat stress transcription factor A-1a

Coordinates

chr5:-:925235..928518

Molecular Weight (calculated)

60693.9 Da

IEP (calculated)

5.149

GRAVY (calculated)

-0.394

Length

556 amino acids

Sequence
(BLAST)

001: MQGGGVAAAA VPVHAAVGGD GGGAAAAPPP PFLMKTYEMV DDPATDGVVS WGPGNNSFIV WNTPEFARDL LPKYFKHSNF SSFVRQLNTY VSHRIPADAT
101: LALLFVISGC AQMGCHKSGR IYEMPMHRDM ETETVSVARL LPLTFKLFLG FRKVDPDRWE FANEGFLRGQ KHLLKTINRR KPSLQGNSQP QQPQLQNAPV
201: PSCVEVGKFG LEEEIERLKR DKNVLMQELV RLRQQQQTTD HQLQTLGKRL QGMESRQQQM MSFLAKAMQS PGFLAQFVQR NENSRRRIVA ANKKRRLPKQ
301: DGGLESESSA ASLDGQIIKY QPSINEAAKA MLRKILNVDS SHRFESMGNS DNSNNNNILL EDYMPAAQAF ESSSSTRNSG VTLAEVPANS GLAYVGTSSA
401: ICSPPAAPEM QCPVVLDNKA YKQVASMSAV PPVSSDMGII PEFSDLADLV SVDILGGAFE MMPGPEFPLP EEGDDGTTMY NNNDEEAQSL PGIINSIWEQ
501: FLVGSPLSTD NEEVDSAGGL YAQEDGWSKV GNIANLTEQM GLVSSTNHRD SGNGLY

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.