Factsheet for Solyc06g072750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069550	Potato	nucleus	93.98	94.18
Solyc03g097120.2.1	Tomato	nucleus	55.81	54.79
Solyc06g053960.2.1	Tomato	nucleus	14.73	50.0
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	51.45	48.44
GSMUA_Achr4P04500_001	Banana	nucleus	40.87	44.87
CDX85486	Canola	nucleus	40.87	44.57
Bra023584.1-P	Field mustard	nucleus	40.66	44.34
KRH77766	Soybean	nucleus	42.53	44.18
CDY38085	Canola	nucleus	40.04	43.96
KRH27709	Soybean	nucleus	41.91	43.53
AT5G16820.2	Thale cress	nucleus	43.15	43.24
GSMUA_Achr3P27600_001	Banana	nucleus	37.34	42.25
CDX92026	Canola	nucleus	39.0	41.96
Os03t0854500-01	Rice	nucleus	43.57	41.5
GSMUA_Achr4P17040_001	Banana	nucleus	41.49	41.07
TraesCS5D01G553300.1	Wheat	nucleus	44.4	41.0
EER93074	Sorghum	nucleus	44.81	40.99
TraesCS4A01G322300.1	Wheat	nucleus	44.19	40.88
Bra001071.1-P	Field mustard	nucleus	38.38	40.84
Bra032023.1-P	Field mustard	nucleus	38.59	40.79
Bra021381.1-P	Field mustard	nucleus	38.38	40.75
CDY58547	Canola	nucleus	38.17	40.53
TraesCS5B01G556200.1	Wheat	nucleus	44.4	40.45
CDX74228	Canola	nucleus	37.97	40.22
Zm00001d034886_P001	Maize	nucleus	43.78	40.04
AT3G02990.1	Thale cress	nucleus	38.8	39.96
CDY16977	Canola	nucleus	36.31	39.68
Bra008593.1-P	Field mustard	nucleus	39.0	38.92
Solyc08g005170.2.1	Tomato	nucleus	42.53	38.9
CDX69418	Canola	nucleus	38.8	38.4
CDY28731	Canola	nucleus	34.44	38.07
HORVU5Hr1G123770.1	Barley	nucleus	43.98	36.93
Solyc08g076590.2.1	Tomato	nucleus	37.34	36.73
Zm00001d012823_P001	Maize	nucleus	41.08	35.61
Solyc09g082670.2.1	Tomato	nucleus	25.73	34.83
Solyc09g065660.2.1	Tomato	nucleus	26.56	34.41
Solyc07g040680.2.1	Tomato	nucleus	22.61	30.62
Solyc03g006000.2.1	Tomato	nucleus	24.48	29.43
Solyc02g072000.2.1	Tomato	nucleus	24.48	28.92
Solyc07g055710.2.1	Tomato	nucleus	23.24	28.87
Solyc12g098520.1.1	Tomato	nucleus	28.01	28.24
Solyc12g007070.1.1	Tomato	nucleus	20.54	26.83
Solyc09g009100.2.1	Tomato	nucleus	25.52	24.16

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	MapMan:26.4.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	UniProt:K4C8Z5
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	EnsemblPlantsGene:Solyc06g072750.2	EnsemblPlants:Solyc06g072750.2.1	UniParc:UPI00027659B5	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44865452..44868448

Molecular Weight (calculated)

54339.1 Da

IEP (calculated)

5.177

GRAVY (calculated)

-0.615

Length

482 amino acids

Sequence
(BLAST)

001: MSPDGEKTKG GVHEIGNSVP PFLSKTYDMV DDRSTDAVVS WSKSNNSFVV WNVPEFSRDV LPKYFKHNNF SSFVRQLNIY GYKKVDPDCW EFANEGFLRG
101: QKHLLKTISR RKPSQMQVHQ ETASQVQSLS VGSCVEVGKI GIEEEVERLK IDKSIHMEEL VSLRQQQKAT DHRLENVGQR LQLMEQREQQ AMTFLAKALQ
201: SPGFIAELVH QQNEGKRRIP GMNKKRRFPN QEEENYAAKQ VSTLRDRQIV RYQPLMNEAA KALLQKLLKT NTSGRLETIV KNTHGFLTNR ARSFENTLET
301: GGISPHISEV TLSQLATSSQ SHLMSDSGFP FNSSLSVIPE IQYSPSLVPG QAKVPQFPEL NALYSKTDNV NPEFSGHGFN TPETHEITNL KRPETGDMPY
401: IETMQDIVDD VTSIIPDGFS MDDVFSDEMP KLPGINDTFW DQILLASPLT GDKDEIGSLA LDDGLSKEED VPEVQESDCD KL

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.