CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77766	Soybean	nucleus	93.1	93.1
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	56.03	50.78
GSMUA_Achr4P04500_001	Banana	nucleus	45.69	48.29
PGSC0003DMT400008199	Potato	nucleus	51.08	48.17
Solyc03g097120.2.1	Tomato	nucleus	50.22	47.45
AT3G02990.1	Thale cress	nucleus	46.98	46.58
CDX85486	Canola	nucleus	44.18	46.38
Bra032023.1-P	Field mustard	nucleus	45.47	46.27
CDY38085	Canola	nucleus	43.53	46.01
Bra021381.1-P	Field mustard	nucleus	44.83	45.81
Bra023584.1-P	Field mustard	nucleus	43.53	45.7
CDY58547	Canola	nucleus	44.61	45.59
AT5G16820.2	Thale cress	nucleus	47.2	45.53
CDX92026	Canola	nucleus	43.75	45.31
CDX74228	Canola	nucleus	44.4	45.27
Bra001071.1-P	Field mustard	nucleus	43.97	45.03
KRH74387	Soybean	nucleus	46.98	44.49
GSMUA_Achr3P27600_001	Banana	nucleus	40.52	44.13
GSMUA_Achr4P17040_001	Banana	nucleus	45.91	43.74
Os03t0854500-01	Rice	nucleus	47.63	43.68
CDY28731	Canola	nucleus	40.73	43.35
KRH07474	Soybean	nucleus	47.41	43.14
KRH39566	Soybean	nucleus	45.69	42.4
PGSC0003DMT400069550	Potato	nucleus	43.53	42.0
Solyc06g072750.2.1	Tomato	nucleus	43.53	41.91
TraesCS4A01G322300.1	Wheat	nucleus	46.98	41.84
TraesCS5D01G553300.1	Wheat	nucleus	46.98	41.76
EER93074	Sorghum	nucleus	46.98	41.37
TraesCS5B01G556200.1	Wheat	nucleus	46.98	41.21
Bra008593.1-P	Field mustard	nucleus	41.59	39.96
CDY16977	Canola	nucleus	37.93	39.91
Zm00001d034886_P001	Maize	nucleus	45.26	39.85
CDX69418	Canola	nucleus	41.81	39.84
KRH31657	Soybean	nucleus	28.23	38.87
KRG91367	Soybean	nucleus	30.6	38.8
Zm00001d012823_P001	Maize	nucleus	45.91	38.31
HORVU5Hr1G123770.1	Barley	nucleus	46.77	37.8
KRH15573	Soybean	nucleus	29.31	37.36
KRH05436	Soybean	nucleus	27.8	36.34
KRH32059	Soybean	nucleus	26.51	36.07
KRH35452	Soybean	nucleus	28.23	35.79
KRH61515	Soybean	nucleus	28.66	35.75
KRG95588	Soybean	nucleus	28.23	35.41
KRH67266	Soybean	nucleus	28.23	33.94
KRH39283	Soybean	nucleus	21.55	31.25
KRH59030	Soybean	nucleus	25.0	28.86
KRH42919	Soybean	nucleus	25.0	28.86
KRH11063	Soybean	nucleus	23.92	28.32
KRH21206	Soybean	nucleus	23.49	27.81
KRH20029	Soybean	nucleus	26.29	26.87
KRH32651	Soybean	nucleus	26.08	26.3
KRH02689	Soybean	nucleus	22.84	26.24
KRH58845	Soybean	nucleus	26.94	26.1
KRH42748	Soybean	nucleus	26.72	26.0
KRH67848	Soybean	nucleus	23.49	25.77
KRH19208	Soybean	nucleus	22.63	25.74

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100808756	MapMan:15.5.13	MapMan:26.4.2.1	EMBL:ACUP02006731	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G009800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	UniProt:I1LFY6	InterPro:IPR036388	EnsemblPlants:KRH27709	ProteinID:KRH27709	ProteinID:KRH27709.1
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI000233C562	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:692991..695989

Molecular Weight (calculated)

52023.2 Da

IEP (calculated)

5.223

GRAVY (calculated)

-0.589

Length

464 amino acids

Sequence
(BLAST)

001: MEGASRNGSV CVAPFLSKTY DMVDDPSTDS VVSWGKNNNT FVVWNVPQFT TDILPKHFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS
101: ISRRKSAHVN GSQQPSQVHK SAVRACVEVG KFGFEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLKNVG QRVQSMEQRQ QQMMSFLAKA MQSPCFIAQF
201: VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLEGH TVKYQSSINE AAKALFLQIL QINNSTTQSS IKSPDVFLID DVPSAIASDS SSSSTQVSNV
301: MVPPISELTS MEVGSQFPLN CMPSNISELQ SSPAVLGFCR NQGMETESSL LNHDLNVMGA DTRNMGEIDM MSTVLDEADE ANHFSPDTDG ISKLPEISDE
401: FWELLLRPSP LTEGTEETKC SSLGCGLTDD QGLPSEMENK QENFDKILHV DHLTQQMGLH ALDY

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.