Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | KRH11849 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | KRH36857 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | KRG93494 | AT3G01300.1 | 21798944 |
| AT3G24520.1 | KRH01126 | AT3G01300.1 | 21798944 |
| AT3G24520.1 | KRH40135 | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 53.75 | 52.28 |
| CDX77420 | Canola | nucleus | 50.0 | 50.96 |
| CDY39545 | Canola | nucleus | 49.69 | 50.64 |
| Bra015050.1-P | Field mustard | nucleus | 48.75 | 50.49 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 20.94 | 50.0 |
| AT3G24520.1 | Thale cress | nucleus | 51.25 | 49.7 |
| CDX93024 | Canola | nucleus | 47.19 | 49.35 |
| CDY50608 | Canola | nucleus | 48.44 | 49.21 |
| Bra013253.1-P | Field mustard | nucleus | 43.12 | 49.11 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 24.69 | 48.77 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 22.19 | 45.81 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 31.56 | 43.72 |
| Zm00001d016255_P001 | Maize | nucleus | 34.06 | 42.41 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 35.94 | 42.12 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 35.94 | 41.82 |
| Zm00001d046299_P001 | Maize | nucleus | 34.69 | 41.57 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 29.69 | 41.48 |
| TraesCSU01G127300.1 | Wheat | nucleus | 35.62 | 41.45 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 29.38 | 41.41 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 35.31 | 41.24 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 37.19 | 41.18 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 35.31 | 40.94 |
| Solyc12g007070.1.1 | Tomato | nucleus | 47.19 | 40.92 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 34.06 | 40.67 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 34.69 | 40.66 |
| TraesCSU01G127200.1 | Wheat | nucleus | 35.0 | 40.58 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 34.69 | 40.51 |
| PGSC0003DMT400001025 | Potato | nucleus | 46.56 | 40.49 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 33.12 | 40.46 |
| KXG29862 | Sorghum | nucleus | 33.75 | 40.45 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 33.12 | 40.3 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 33.44 | 40.23 |
| EER89919 | Sorghum | nucleus | 35.0 | 40.14 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 32.81 | 39.62 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 32.81 | 39.47 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 29.06 | 39.41 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 36.56 | 39.39 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 29.38 | 38.68 |
| Os02t0232000-01 | Rice | nucleus | 35.94 | 38.59 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 29.06 | 38.59 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 32.81 | 38.04 |
| Os01t0733200-01 | Rice | nucleus | 29.69 | 38.0 |
| Zm00001d043536_P001 | Maize | nucleus | 29.38 | 37.75 |
| KXG33312 | Sorghum | nucleus | 30.31 | 37.31 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 23.12 | 35.41 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 34.69 | 34.26 |
| GSMUA_Achr10P... | Banana | nucleus | 32.19 | 33.77 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 34.69 | 33.04 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 29.69 | 32.87 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 28.44 | 32.27 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 30.31 | 31.91 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 31.88 | 31.78 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 30.31 | 31.7 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 31.88 | 31.38 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 30.62 | 31.21 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 30.62 | 31.21 |
| Zm00001d044168_P001 | Maize | nucleus | 32.19 | 31.12 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 31.56 | 31.08 |
| Os01t0625300-01 | Rice | nucleus | 32.81 | 30.97 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 31.25 | 30.58 |
| KRH31657 | Soybean | nucleus | 31.25 | 29.67 |
| CDY43158 | Canola | nucleus | 28.12 | 29.41 |
| KRG95588 | Soybean | nucleus | 33.12 | 28.65 |
| KRH32059 | Soybean | nucleus | 30.31 | 28.45 |
| EES01103 | Sorghum | nucleus | 31.88 | 27.95 |
| KRG91367 | Soybean | nucleus | 31.88 | 27.87 |
| KRH67266 | Soybean | nucleus | 33.12 | 27.46 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 30.94 | 27.27 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 20.0 | 27.0 |
| Zm00001d011406_P001 | Maize | nucleus | 32.19 | 26.61 |
| KRH35452 | Soybean | nucleus | 30.31 | 26.5 |
| KRH05436 | Soybean | nucleus | 29.38 | 26.48 |
| KRH15573 | Soybean | nucleus | 30.0 | 26.37 |
| KRH61515 | Soybean | nucleus | 28.75 | 24.73 |
| KRH11063 | Soybean | nucleus | 30.0 | 24.49 |
| KRH21206 | Soybean | nucleus | 29.69 | 24.23 |
| KRH59030 | Soybean | nucleus | 29.06 | 23.13 |
| KRH42919 | Soybean | nucleus | 28.44 | 22.64 |
| KRH74387 | Soybean | nucleus | 34.06 | 22.24 |
| KRH39566 | Soybean | nucleus | 34.69 | 22.2 |
| KRH77766 | Soybean | nucleus | 32.19 | 22.2 |
| KRH19208 | Soybean | nucleus | 28.12 | 22.06 |
| KRH27709 | Soybean | nucleus | 31.25 | 21.55 |
| KRH02689 | Soybean | nucleus | 26.88 | 21.29 |
| KRH07474 | Soybean | nucleus | 32.81 | 20.59 |
| KRH20029 | Soybean | nucleus | 28.75 | 20.26 |
| KRH67848 | Soybean | nucleus | 25.62 | 19.39 |
| KRH32651 | Soybean | nucleus | 27.81 | 19.35 |
| KRH58845 | Soybean | nucleus | 28.75 | 19.21 |
| KRH42748 | Soybean | nucleus | 28.44 | 19.08 |
| CDY43157 | Canola | cytosol | 2.19 | 7.78 |
Protein Annotations
| Gene3D:1.10.10.10 | EntrezGene:100794896 | MapMan:15.5.13 | EMBL:ACUP02005929 | ncoils:Coil | EnsemblPlantsGene:GLYMA_09G190600 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| UniProt:I1L4I1 | InterPro:IPR036388 | EnsemblPlants:KRH39283 | ProteinID:KRH39283 | ProteinID:KRH39283.1 | PFAM:PF00447 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 |
| UniParc:UPI0001E24837 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr9:+:41510671..41512565
Molecular Weight (calculated)
35977.8 Da
IEP (calculated)
6.747
GRAVY (calculated)
-0.495
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEHNIIVNN NNVIAPFVIK TYNMVNDPTT DKLIMWGPAN NSFIVLDPLD FSHSLLPAFF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE WFLRGQKHLL
101: RNIARRKHGG AGRSNFNLHS HHHPLKVEEL DDEAMVMEIA RLKEEQKALE EELQGMNKRL ETTEKRPQQM MAFLSKVVED PQVLSRILRE REKKHLGEKK
201: RRLIPPPTTT AATTSSSSSS GIKTEFEEDE GNYNIMSSSP ETGLEIDNNN ICSPLAAGYW GEQGCHGYNR GAVTAPLTVV APAVPTMGGG YLGRGVFFGE
301: MAAEGNAVPP YPFSLLEGGF
101: RNIARRKHGG AGRSNFNLHS HHHPLKVEEL DDEAMVMEIA RLKEEQKALE EELQGMNKRL ETTEKRPQQM MAFLSKVVED PQVLSRILRE REKKHLGEKK
201: RRLIPPPTTT AATTSSSSSS GIKTEFEEDE GNYNIMSSSP ETGLEIDNNN ICSPLAAGYW GEQGCHGYNR GAVTAPLTVV APAVPTMGGG YLGRGVFFGE
301: MAAEGNAVPP YPFSLLEGGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.