Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P19330_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | GSMUA_Achr8P19330_001 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | GSMUA_AchrUn_... | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 68.86 | 65.25 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 27.34 | 58.96 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 32.87 | 58.64 |
| Zm00001d016255_P001 | Maize | nucleus | 50.87 | 57.2 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 30.1 | 56.13 |
| Zm00001d046299_P001 | Maize | nucleus | 50.87 | 55.06 |
| KXG29862 | Sorghum | nucleus | 50.52 | 54.68 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 51.56 | 54.58 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 42.91 | 53.68 |
| EER89919 | Sorghum | nucleus | 51.21 | 53.05 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 41.87 | 52.84 |
| TraesCSU01G127200.1 | Wheat | nucleus | 49.83 | 52.17 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 49.13 | 51.82 |
| Os02t0232000-01 | Rice | nucleus | 53.29 | 51.68 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 47.75 | 51.49 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 48.79 | 51.09 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 46.37 | 50.95 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 46.71 | 50.75 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 48.1 | 50.73 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 46.37 | 50.57 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 47.75 | 50.55 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 48.1 | 50.55 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 46.37 | 50.38 |
| TraesCSU01G127300.1 | Wheat | nucleus | 47.4 | 49.82 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 41.87 | 49.79 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 47.75 | 46.46 |
| GSMUA_Achr3P06020_001 | Banana | nucleus | 23.53 | 44.74 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 40.14 | 44.27 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 49.13 | 42.26 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 27.68 | 38.28 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 36.33 | 38.04 |
| Bra013253.1-P | Field mustard | nucleus | 36.33 | 37.37 |
| KRH39283 | Soybean | nucleus | 41.18 | 37.19 |
| CDX77420 | Canola | nucleus | 40.14 | 36.94 |
| Bra015050.1-P | Field mustard | nucleus | 39.45 | 36.89 |
| CDX93024 | Canola | nucleus | 38.75 | 36.6 |
| CDY39545 | Canola | nucleus | 39.45 | 36.31 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 41.18 | 36.17 |
| CDY50608 | Canola | nucleus | 39.1 | 35.87 |
| AT3G24520.1 | Thale cress | nucleus | 39.79 | 34.85 |
| GSMUA_Achr8P20520_001 | Banana | nucleus | 33.91 | 33.79 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 35.64 | 31.79 |
| GSMUA_Achr8P27750_001 | Banana | nucleus | 23.53 | 30.77 |
| GSMUA_Achr6P24430_001 | Banana | nucleus | 32.53 | 30.52 |
| GSMUA_Achr2P16660_001 | Banana | nucleus | 28.72 | 30.4 |
| PGSC0003DMT400001025 | Potato | nucleus | 38.41 | 30.16 |
| Solyc12g007070.1.1 | Tomato | nucleus | 38.06 | 29.81 |
| GSMUA_Achr6P00960_001 | Banana | nucleus | 31.83 | 29.39 |
| CDY43158 | Canola | nucleus | 30.8 | 29.09 |
| GSMUA_Achr5P03000_001 | Banana | nucleus | 33.56 | 29.04 |
| GSMUA_Achr1P27200_001 | Banana | nucleus | 32.53 | 28.23 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 35.29 | 28.1 |
| GSMUA_Achr2P21640_001 | Banana | nucleus | 30.8 | 26.81 |
| GSMUA_Achr8P28330_001 | Banana | nucleus | 25.95 | 22.94 |
| GSMUA_Achr4P04500_001 | Banana | nucleus | 34.26 | 22.55 |
| GSMUA_Achr9P01640_001 | Banana | nucleus | 29.41 | 22.31 |
| GSMUA_Achr3P27600_001 | Banana | nucleus | 32.53 | 22.07 |
| GSMUA_Achr6P27750_001 | Banana | nucleus | 29.07 | 21.37 |
| GSMUA_Achr4P17040_001 | Banana | nucleus | 33.56 | 19.92 |
| GSMUA_Achr3P15640_001 | Banana | nucleus | 28.37 | 18.1 |
| GSMUA_Achr6P31750_001 | Banana | nucleus | 28.37 | 16.87 |
| GSMUA_Achr5P15900_001 | Banana | nucleus | 31.14 | 16.45 |
| CDY43157 | Canola | cytosol | 1.73 | 5.56 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr4G30990_001 | EnsemblPlants:GSMUA_Achr4P30990_001 | EnsemblPlants:GSMUA_Achr4T30990_001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam |
| InterPro:IPR036388 | UniProt:M0STL1 | PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 |
| PANTHER:PTHR10015:SF171 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI000295663C | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
| SEG:seg | : | : | : | : | : |
Description
Heat stress transcription factor C-2a [Source:GMGC_GENE;Acc:GSMUA_Achr4G30990_001]
Coordinates
chr4:+:28352575..28353701
Molecular Weight (calculated)
31993.5 Da
IEP (calculated)
5.640
GRAVY (calculated)
-0.575
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGSRSTVH HQRYRHGGGG GGPVAAPFVL KTYRMVDDPS TDAVIAWGCD NNSFVVIDPF AFSQSLLPSH FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH
101: ASFLRGQMHL LKQIVRRNSG CGKKKKEGGE EEENEEEEER VVAEVVRLKQ EQRRIDETVQ GMWRRVQETE RRPRQMLAFL VKVAGDPKLI HRLGGPAAAT
201: DAIEAGEKRA RLRSGADERM LEMEGGSGGC SFDGQAMAEG DEEEFLGTID SVGLYGGPAW AGSEYGGMEV DVGVGSAAYP FSFHLDTGF
101: ASFLRGQMHL LKQIVRRNSG CGKKKKEGGE EEENEEEEER VVAEVVRLKQ EQRRIDETVQ GMWRRVQETE RRPRQMLAFL VKVAGDPKLI HRLGGPAAAT
201: DAIEAGEKRA RLRSGADERM LEMEGGSGGC SFDGQAMAEG DEEEFLGTID SVGLYGGPAW AGSEYGGMEV DVGVGSAAYP FSFHLDTGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.