Factsheet for TraesCS3B01G568300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G373900.2
TraesCS1A01G374100.1
TraesCS1B01G393900.3
TraesCS1B01G394200.1
TraesCS1D01G380600.1
TraesCS1D01G380700.1
TraesCS2A01G007200.1
TraesCS2B01G013500.2
TraesCS2D01G008300.2
TraesCS3A01G210700.1
TraesCS3B01G241300.1
TraesCS3D01G213600.1
TraesCS5A01G193300.2
TraesCS5B01G188700.1
TraesCS5D01G195800.2
TraesCS6A01G051100.1
TraesCS6B01G067600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	TraesCS1A01G373900.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS1A01G374100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G393900.3	AT1G19980.1	21798944
AT3G24520.1	TraesCS1B01G394200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS1D01G380700.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2A01G007200.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS2B01G013500.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS2D01G008300.2	AT1G19980.1	21798944
AT3G24520.1	TraesCS6A01G051100.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS6B01G067600.1	AT1G19980.1	21798944
AT3G24520.1	TraesCS3A01G210700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3B01G241300.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS3D01G213600.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5A01G193300.2	AT3G01300.1	21798944
AT3G24520.1	TraesCS5B01G188700.1	AT3G01300.1	21798944
AT3G24520.1	TraesCS5D01G195800.2	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G358900.1	Wheat	nucleus	89.78	89.13
TraesCS5A01G548700.1	Wheat	nucleus	88.69	88.69
TraesCS4B01G383300.1	Wheat	nucleus	87.23	86.91
TraesCS4B01G383200.1	Wheat	nucleus	68.98	81.82
TraesCS3B01G568200.1	Wheat	nucleus	68.25	81.66
TraesCS4B01G383400.1	Wheat	nucleus	74.45	76.12
TraesCS4B01G385800.1	Wheat	nucleus	68.98	69.23
HORVU4Hr1G090850.1	Barley	nucleus	78.47	63.99
Zm00001d016255_P001	Maize	nucleus	55.11	58.75
KXG29862	Sorghum	nucleus	56.57	58.05
TraesCS7B01G272500.1	Wheat	nucleus	53.65	55.89
Os02t0232000-01	Rice	nucleus	58.76	54.03
GSMUA_Achr4P30990_001	Banana	nucleus	50.73	48.1
TraesCS3B01G314600.1	Wheat	nucleus	38.32	46.26
GSMUA_Achr10P...	Banana	nucleus	48.54	43.61
Bra013253.1-P	Field mustard	nucleus	36.5	35.59
KRH39283	Soybean	nucleus	40.51	34.69
CDX93024	Canola	nucleus	38.69	34.64
TraesCS3B01G425200.1	Wheat	nucleus	37.23	33.55
Bra015050.1-P	Field mustard	nucleus	37.59	33.33
CDY50608	Canola	nucleus	38.32	33.33
CDX77420	Canola	nucleus	37.59	32.8
CDY39545	Canola	nucleus	37.59	32.8
TraesCS3B01G255600.1	Wheat	nucleus	38.32	32.31
AT3G24520.1	Thale cress	nucleus	38.69	32.12
VIT_11s0016g03940.t01	Wine grape	nucleus	37.23	31.0
TraesCS5B01G440700.1	Wheat	nucleus	36.5	28.33
TraesCS7B01G267300.1	Wheat	nucleus	36.13	28.05
CDY43158	Canola	nucleus	30.66	27.45
TraesCS1B01G396000.1	Wheat	nucleus	35.77	27.37
Solyc12g007070.1.1	Tomato	nucleus	35.77	26.56
TraesCS4B01G278100.1	Wheat	nucleus	32.85	26.39
PGSC0003DMT400001025	Potato	nucleus	35.04	26.09
TraesCS2B01G105100.1	Wheat	nucleus	33.94	22.96
TraesCS4B01G239700.1	Wheat	nucleus	31.75	22.66
TraesCS3B01G438900.1	Wheat	nucleus	32.12	20.32
TraesCS6B01G127000.1	Wheat	nucleus	31.75	19.12
TraesCS2B01G232000.2	Wheat	nucleus	32.85	18.95
TraesCS5B01G556200.1	Wheat	nucleus	35.77	18.53
TraesCS3B01G323800.1	Wheat	nucleus	28.1	17.46
CDY43157	Canola	cytosol	0.73	2.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056
ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF171	SMART:SM00415	SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS3B01G568300
EnsemblPlants:TraesCS3B01G568300.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:799982307..799983131

Molecular Weight (calculated)

29977.6 Da

IEP (calculated)

7.560

GRAVY (calculated)

-0.378

Length

274 amino acids

Sequence
(BLAST)

001: MSGAGGMECS GSGGTVAPFV AKTFAMVDDP ATDAVVRWGP ASNSFVVADP FTFSHALLPA HFKHANFSSF VRQLNTYGFR KVDPDRWEFA HASFLRGQTH
101: LLPRIVRRRS GGKGGKEDAD GEEDEDISSK MLAMEVVRLK EEQRATEDRL ASMRRRVQDA ERRPKLMLAF LLKVVGDPDV LRRLVGNSSC GGGLFPGEGA
201: EAKRPRLLLD GEVQVGKKKM RVDGDGLSCG INRQEAFVRE PRVDFTGFYT GGDGFSDVPV ANDLPYAFPV DTGY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.