Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77420 | Canola | nucleus | 96.5 | 96.5 |
| Bra015050.1-P | Field mustard | nucleus | 93.31 | 94.82 |
| CDX93024 | Canola | nucleus | 84.39 | 86.6 |
| CDY50608 | Canola | nucleus | 85.99 | 85.71 |
| AT3G24520.1 | Thale cress | nucleus | 85.35 | 81.21 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 53.5 | 51.06 |
| KRH39283 | Soybean | nucleus | 50.64 | 49.69 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 20.38 | 47.76 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 23.25 | 45.06 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 21.02 | 42.58 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 31.21 | 42.42 |
| Solyc12g007070.1.1 | Tomato | nucleus | 48.41 | 41.19 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 29.62 | 40.97 |
| PGSC0003DMT400001025 | Potato | nucleus | 47.45 | 40.49 |
| Zm00001d016255_P001 | Maize | nucleus | 33.12 | 40.47 |
| Zm00001d046299_P001 | Maize | nucleus | 34.08 | 40.07 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 36.31 | 39.45 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 29.62 | 39.41 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 34.08 | 39.19 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 33.12 | 39.1 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 28.34 | 38.86 |
| EER89919 | Sorghum | nucleus | 34.39 | 38.71 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 29.62 | 38.59 |
| Zm00001d043536_P001 | Maize | nucleus | 30.57 | 38.55 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 32.8 | 38.43 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 33.76 | 38.41 |
| TraesCSU01G127200.1 | Wheat | nucleus | 33.76 | 38.41 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 32.17 | 38.4 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 33.44 | 38.32 |
| KXG29862 | Sorghum | nucleus | 32.48 | 38.2 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 32.17 | 38.11 |
| Os01t0733200-01 | Rice | nucleus | 30.25 | 38.0 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 32.17 | 37.97 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 32.8 | 37.59 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 32.8 | 37.45 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 32.48 | 37.36 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 32.8 | 37.32 |
| KXG33312 | Sorghum | nucleus | 30.89 | 37.31 |
| TraesCSU01G127300.1 | Wheat | nucleus | 32.48 | 37.09 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 28.66 | 37.04 |
| Os02t0232000-01 | Rice | nucleus | 34.08 | 35.91 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 33.76 | 35.69 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 23.57 | 35.41 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 28.98 | 34.73 |
| GSMUA_Achr10P... | Banana | nucleus | 33.44 | 34.43 |
| CDY14893 | Canola | nucleus | 26.75 | 32.06 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 29.3 | 31.83 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 33.44 | 31.25 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 31.53 | 30.56 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 29.62 | 30.39 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 29.3 | 30.26 |
| CDY29054 | Canola | nucleus | 25.48 | 30.19 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 27.07 | 30.14 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 30.57 | 29.91 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 30.89 | 29.85 |
| Os01t0625300-01 | Rice | nucleus | 32.17 | 29.79 |
| CDX94887 | Canola | nucleus | 25.48 | 29.63 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 29.62 | 29.62 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 29.62 | 29.62 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 30.57 | 29.54 |
| CDY43158 | Canola | nucleus | 28.66 | 29.41 |
| CDX90626 | Canola | nucleus | 25.16 | 29.37 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 30.57 | 29.36 |
| Zm00001d044168_P001 | Maize | nucleus | 30.89 | 29.31 |
| CDX95313 | Canola | nucleus | 24.2 | 28.36 |
| CDX76693 | Canola | nucleus | 25.48 | 28.07 |
| CDY11470 | Canola | nucleus | 25.48 | 28.07 |
| CDX90627 | Canola | nucleus | 25.48 | 27.87 |
| CDY21503 | Canola | nucleus | 30.57 | 27.51 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 20.38 | 27.0 |
| EES01103 | Sorghum | nucleus | 30.89 | 26.58 |
| CDX94884 | Canola | nucleus | 24.2 | 26.48 |
| Zm00001d011406_P001 | Maize | nucleus | 31.85 | 25.84 |
| CDX70290 | Canola | nucleus | 29.62 | 25.62 |
| CDX83217 | Canola | nucleus | 29.94 | 25.2 |
| CDY13041 | Canola | nucleus | 24.52 | 25.08 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 28.98 | 25.07 |
| CDY10674 | Canola | nucleus | 30.89 | 24.94 |
| CDY10311 | Canola | nucleus | 30.57 | 24.74 |
| CDY34229 | Canola | nucleus | 29.62 | 24.54 |
| CDY46607 | Canola | nucleus | 28.03 | 23.72 |
| CDY10361 | Canola | nucleus | 30.25 | 23.69 |
| CDX92958 | Canola | nucleus | 25.8 | 23.55 |
| CDY46606 | Canola | nucleus | 28.66 | 23.5 |
| CDX78797 | Canola | nucleus | 31.21 | 22.79 |
| CDY60785 | Canola | nucleus | 31.21 | 22.43 |
| CDY23108 | Canola | nucleus | 24.2 | 22.35 |
| CDY28731 | Canola | nucleus | 30.57 | 22.02 |
| CDY16977 | Canola | nucleus | 30.89 | 22.0 |
| CDY38085 | Canola | nucleus | 29.94 | 21.41 |
| CDY58547 | Canola | nucleus | 30.89 | 21.37 |
| CDY09259 | Canola | nucleus | 24.52 | 21.27 |
| CDX85486 | Canola | nucleus | 29.94 | 21.27 |
| CDX74228 | Canola | nucleus | 30.57 | 21.1 |
| CDX76506 | Canola | nucleus | 24.52 | 21.04 |
| CDX92026 | Canola | nucleus | 29.62 | 20.76 |
| CDX93842 | Canola | nucleus | 31.85 | 20.53 |
| CDY01288 | Canola | nucleus | 31.85 | 20.33 |
| CDX99415 | Canola | nucleus | 24.84 | 20.31 |
| CDY69818 | Canola | nucleus | 24.52 | 19.74 |
| CDY01562 | Canola | nucleus | 24.52 | 19.59 |
| CDX69418 | Canola | nucleus | 30.25 | 19.51 |
| CDY01180 | Canola | nucleus | 28.34 | 18.66 |
| CDY12723 | Canola | nucleus | 28.03 | 18.53 |
| CDY44649 | Canola | nucleus | 23.57 | 15.58 |
| CDX78902 | Canola | nucleus | 25.16 | 15.28 |
| CDY43157 | Canola | cytosol | 2.23 | 7.78 |
| CDX84097 | Canola | nucleus | 4.46 | 5.2 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | GO:A0A078HM68 | UniProt:A0A078HM68 | EnsemblPlants:CDY39545 | ProteinID:CDY39545 |
| ProteinID:CDY39545.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00068086001 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | PFAM:PF00447 | PRINTS:PR00056 |
| ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 | UniParc:UPI0004EEB5C0 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
BnaC07g07130DBnaC07g07130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM68]
Coordinates
chrLK032451:-:120378..121457
Molecular Weight (calculated)
35931.3 Da
IEP (calculated)
6.084
GRAVY (calculated)
-0.731
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDNNNNTN TNVIAPFVVK TYQMVNDPST DWLITWGPAH NSFIVVDPLD FSQRILPAYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE HFLRGQKHLL
101: KNIARRKHAR GVIYGQEMED GEIVREIERL KDEQRDLELE IQRMNQRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKLVSDKKK RRVTVKSEDE
201: EENGRVFGII SPSPSPPENV YRTQPPENSV RWVVPMQKPG NFGSYNETGL ISTSSTSSSL TSTLSLPESV NGDGGGCGSI QGETRYREAA TFGGVVESSP
301: QTPPYPFSLF RGGF
101: KNIARRKHAR GVIYGQEMED GEIVREIERL KDEQRDLELE IQRMNQRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKLVSDKKK RRVTVKSEDE
201: EENGRVFGII SPSPSPPENV YRTQPPENSV RWVVPMQKPG NFGSYNETGL ISTSSTSSSL TSTLSLPESV NGDGGGCGSI QGETRYREAA TFGGVVESSP
301: QTPPYPFSLF RGGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.