Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G001310.16 | |
| HORVU3Hr1G051080.3 | |
| HORVU5Hr1G056920.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | HORVU2Hr1G001310.16 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | HORVU3Hr1G051080.3 | AT3G01300.1 | 21798944 |
| AT3G24520.1 | HORVU5Hr1G056920.1 | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G383200.1 | Wheat | nucleus | 56.55 | 82.25 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 66.07 | 80.73 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 65.48 | 79.71 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 64.29 | 78.83 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 63.99 | 78.47 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 52.38 | 76.86 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 34.82 | 72.22 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 32.44 | 70.32 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 26.19 | 65.67 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 46.73 | 64.61 |
| Zm00001d016255_P001 | Maize | nucleus | 47.62 | 62.26 |
| KXG29862 | Sorghum | nucleus | 48.51 | 61.05 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 51.19 | 57.91 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 45.24 | 57.14 |
| Os02t0232000-01 | Rice | nucleus | 50.0 | 56.38 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 42.26 | 49.13 |
| GSMUA_Achr10P... | Banana | nucleus | 40.18 | 44.26 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 30.36 | 35.29 |
| Bra013253.1-P | Field mustard | nucleus | 29.46 | 35.23 |
| CDX93024 | Canola | nucleus | 31.85 | 34.97 |
| KRH39283 | Soybean | nucleus | 33.04 | 34.69 |
| Bra015050.1-P | Field mustard | nucleus | 31.25 | 33.98 |
| CDY50608 | Canola | nucleus | 31.55 | 33.65 |
| CDX77420 | Canola | nucleus | 31.25 | 33.44 |
| CDY39545 | Canola | nucleus | 31.25 | 33.44 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 31.85 | 32.72 |
| AT3G24520.1 | Thale cress | nucleus | 31.85 | 32.42 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 31.55 | 32.22 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 21.13 | 29.96 |
| CDY43158 | Canola | nucleus | 25.6 | 28.1 |
| HORVU7Hr1G087690.1 | Barley | nucleus | 30.06 | 27.67 |
| Solyc12g007070.1.1 | Tomato | nucleus | 30.36 | 27.64 |
| HORVU1Hr1G083420.2 | Barley | nucleus | 30.36 | 27.42 |
| PGSC0003DMT400001025 | Potato | nucleus | 29.76 | 27.17 |
| HORVU4Hr1G073650.2 | Barley | nucleus | 27.68 | 27.03 |
| HORVU5Hr1G094380.1 | Barley | nucleus | 28.27 | 25.61 |
| HORVU2Hr1G014590.1 | Barley | nucleus | 29.46 | 23.68 |
| HORVU6Hr1G017910.1 | Barley | nucleus | 27.68 | 20.35 |
| HORVU5Hr1G105770.2 | Barley | nucleus | 30.95 | 19.96 |
| HORVU1Hr1G081300.1 | Barley | nucleus | 24.4 | 19.03 |
| HORVU3Hr1G071550.3 | Barley | nucleus | 23.81 | 18.52 |
| HORVU5Hr1G123770.1 | Barley | nucleus | 30.06 | 17.6 |
| HORVU0Hr1G008940.2 | Barley | cytosol, nucleus | 14.88 | 17.06 |
| CDY43157 | Canola | cytosol | 0.6 | 2.22 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | UniProt:A0A287Q4Z3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:HORVU4Hr1G090850 | EnsemblPlants:HORVU4Hr1G090850.1 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 |
| PFAM:PF00447 | PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF171 | SMART:SM00415 |
| SUPFAM:SSF46785 | UniParc:UPI000B46DC72 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:+:646213919..646215357
Molecular Weight (calculated)
37005.7 Da
IEP (calculated)
6.316
GRAVY (calculated)
-0.315
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: VATQRSHAST DTAASLCLPY PIYIYNSAPT VTTTSTQDIS VSLSLCWPAA PSHYKSFSPP CFPFAWSEIK MSSAGGGMVA PFVAKTYGMV DDPATDAVVA
101: WGPASNSFVV ADPFAFSEML LPAHFKHANF SSFVRQLNTY GFRKVDPDRW EFAHSSFLRG QTHLLPRIVR RRQSGGARRP SKDDHAEDED SSSAMLAMEV
201: MRLKEEQRAT EERVAAMWRR VQDAERRPKL MLAFLLKVVG DPDVLRRLMG SSSSDAGLFP GDGAEPKRPR LLLDGEVHVG KKMRVDGDGM LYGTDRQDVF
301: VREPGADFAG FYTGGDGFSD VPVDDPPYVF PVDSGY
101: WGPASNSFVV ADPFAFSEML LPAHFKHANF SSFVRQLNTY GFRKVDPDRW EFAHSSFLRG QTHLLPRIVR RRQSGGARRP SKDDHAEDED SSSAMLAMEV
201: MRLKEEQRAT EERVAAMWRR VQDAERRPKL MLAFLLKVVG DPDVLRRLMG SSSSDAGLFP GDGAEPKRPR LLLDGEVHVG KKMRVDGDGM LYGTDRQDVF
301: VREPGADFAG FYTGGDGFSD VPVDDPPYVF PVDSGY
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.