Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g010780.2.1 | |
| Solyc04g081450.2.1 | |
| Solyc05g007050.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G24520.1 | Solyc04g081450.2.1 | AT1G19980.1 | 21798944 |
| AT3G24520.1 | Solyc01g010780.2.1 | AT3G01300.1 | 21798944 |
| AT3G24520.1 | Solyc05g007050.2.1 | AT3G01300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001025 | Potato | nucleus | 96.21 | 96.47 |
| VIT_11s0016g03940.t01 | Wine grape | nucleus | 47.7 | 53.5 |
| Bra015050.1-P | Field mustard | nucleus | 40.92 | 48.87 |
| CDX93024 | Canola | nucleus | 40.38 | 48.69 |
| CDX77420 | Canola | nucleus | 41.19 | 48.41 |
| CDY39545 | Canola | nucleus | 41.19 | 48.41 |
| Bra013253.1-P | Field mustard | nucleus | 36.86 | 48.4 |
| CDY50608 | Canola | nucleus | 40.92 | 47.94 |
| KRH39283 | Soybean | nucleus | 40.92 | 47.19 |
| AT3G24520.1 | Thale cress | nucleus | 42.01 | 46.97 |
| HORVU7Hr1G055320.1 | Barley | mitochondrion, nucleus | 20.6 | 46.91 |
| HORVU7Hr1G034320.1 | Barley | nucleus, plastid | 16.53 | 45.52 |
| HORVU2Hr1G043030.1 | Barley | nucleus | 17.89 | 42.58 |
| Solyc06g053960.2.1 | Tomato | nucleus | 16.26 | 42.25 |
| Zm00001d016255_P001 | Maize | nucleus | 28.73 | 41.25 |
| Zm00001d046299_P001 | Maize | nucleus | 29.81 | 41.2 |
| TraesCS4B01G383200.1 | Wheat | nucleus | 25.47 | 40.69 |
| KXG29862 | Sorghum | nucleus | 29.0 | 40.07 |
| TraesCS7B01G272500.1 | Wheat | nucleus | 28.46 | 39.92 |
| TraesCS7A01G355300.1 | Wheat | nucleus | 28.73 | 39.85 |
| EER89919 | Sorghum | nucleus | 30.08 | 39.78 |
| TraesCS7D01G367700.1 | Wheat | nucleus | 28.18 | 39.25 |
| TraesCS3B01G314600.1 | Wheat | nucleus | 24.12 | 39.21 |
| HORVU7Hr1G088920.3 | Barley | nucleus | 27.91 | 38.72 |
| TraesCS4B01G385800.1 | Wheat | nucleus | 28.46 | 38.46 |
| TraesCS3A01G280800.1 | Wheat | nucleus | 24.39 | 38.14 |
| GSMUA_Achr4P30990_001 | Banana | nucleus | 29.81 | 38.06 |
| TraesCS3B01G568200.1 | Wheat | nucleus | 23.58 | 37.99 |
| TraesCSU01G127300.1 | Wheat | nucleus | 28.18 | 37.82 |
| TraesCS5A01G524000.1 | Wheat | nucleus | 26.56 | 37.4 |
| HORVU7Hr1G119990.1 | Barley | nucleus | 24.39 | 37.04 |
| TraesCSU01G127200.1 | Wheat | nucleus | 27.64 | 36.96 |
| Zm00001d043536_P001 | Maize | nucleus | 24.93 | 36.95 |
| TraesCS4B01G383400.1 | Wheat | nucleus | 26.83 | 36.94 |
| TraesCS3D01G280600.1 | Wheat | nucleus | 24.12 | 36.93 |
| TraesCS5A01G548700.1 | Wheat | nucleus | 27.37 | 36.86 |
| GSMUA_Achr7P24790_001 | Banana | nucleus | 20.87 | 36.84 |
| TraesCS5A01G550700.1 | Wheat | nucleus | 27.1 | 36.63 |
| TraesCS4D01G358900.1 | Wheat | nucleus | 27.37 | 36.59 |
| TraesCS4B01G383300.1 | Wheat | nucleus | 27.1 | 36.36 |
| Os02t0232000-01 | Rice | nucleus | 29.27 | 36.24 |
| GSMUA_Achr3P15740_001 | Banana | nucleus | 27.1 | 36.23 |
| Os01t0733200-01 | Rice | nucleus | 24.39 | 36.0 |
| TraesCS3B01G568300.1 | Wheat | nucleus | 26.56 | 35.77 |
| KXG33312 | Sorghum | nucleus | 24.93 | 35.38 |
| HORVU4Hr1G090090.4 | Barley | nucleus, plastid | 28.18 | 35.02 |
| GSMUA_Achr10P... | Banana | nucleus | 27.64 | 33.44 |
| HORVU3Hr1G088890.2 | Barley | nucleus | 25.47 | 32.53 |
| GSMUA_Achr3P31860_001 | Banana | nucleus | 28.18 | 32.1 |
| TraesCS3D01G385900.1 | Wheat | nucleus | 26.02 | 31.37 |
| TraesCS3A01G393100.1 | Wheat | nucleus | 23.85 | 31.21 |
| TraesCS3B01G425200.1 | Wheat | nucleus | 25.47 | 30.92 |
| CDY43158 | Canola | nucleus | 25.47 | 30.72 |
| TraesCS3A01G229000.1 | Wheat | nucleus | 26.83 | 30.46 |
| HORVU4Hr1G090850.1 | Barley | nucleus | 27.64 | 30.36 |
| HORVU3Hr1G055960.1 | Barley | nucleus | 26.83 | 30.28 |
| TraesCS3D01G227200.1 | Wheat | nucleus | 26.29 | 30.22 |
| TraesCS3B01G255600.1 | Wheat | nucleus | 26.56 | 30.15 |
| Os01t0625300-01 | Rice | nucleus | 27.64 | 30.09 |
| TraesCS3A01G393200.1 | Wheat | nucleus | 25.47 | 29.94 |
| TraesCS3D01G386000.1 | Wheat | nucleus | 25.47 | 29.94 |
| Zm00001d044168_P001 | Maize | nucleus | 26.83 | 29.91 |
| GSMUA_Achr8P27820_001 | Banana | nucleus | 27.64 | 28.1 |
| EES01103 | Sorghum | nucleus | 27.37 | 27.67 |
| Solyc09g082670.2.1 | Tomato | nucleus | 26.29 | 27.25 |
| HORVU3Hr1G069590.4 | Barley | nucleus, plastid | 17.07 | 26.58 |
| Zm00001d011406_P001 | Maize | nucleus | 27.37 | 26.1 |
| Solyc09g065660.2.1 | Tomato | nucleus | 23.58 | 23.39 |
| Solyc07g040680.2.1 | Tomato | nucleus | 21.95 | 22.75 |
| Solyc03g006000.2.1 | Tomato | nucleus | 24.12 | 22.19 |
| Solyc02g072000.2.1 | Tomato | nucleus | 24.39 | 22.06 |
| Solyc06g072750.2.1 | Tomato | nucleus | 26.83 | 20.54 |
| Solyc03g097120.2.1 | Tomato | nucleus | 26.83 | 20.16 |
| Solyc07g055710.2.1 | Tomato | nucleus | 21.14 | 20.1 |
| Solyc12g098520.1.1 | Tomato | nucleus | 24.93 | 19.25 |
| Solyc08g005170.2.1 | Tomato | nucleus | 27.37 | 19.17 |
| Solyc08g076590.2.1 | Tomato | nucleus | 23.85 | 17.96 |
| Solyc09g009100.2.1 | Tomato | nucleus | 24.66 | 17.88 |
| CDY43157 | Canola | cytosol | 1.63 | 6.67 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:15.5.13 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:HSF_DNA-bd | InterPro:HSF_fam | InterPro:IPR036388 | UniProt:K4DBP4 | PFAM:PF00447 |
| PRINTS:PR00056 | ScanProsite:PS00434 | PANTHER:PTHR10015 | PANTHER:PTHR10015:SF187 | SMART:SM00415 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:Solyc12g007070.1 | EnsemblPlants:Solyc12g007070.1.1 | UniParc:UPI000276AAE8 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Heat stress transcription factor C-1 [Source:Projected from Arabidopsis thaliana (AT3G24520) UniProtKB/Swiss-Prot;Acc:Q9LV52]
Coordinates
chr12:+:1512824..1514090
Molecular Weight (calculated)
41175.4 Da
IEP (calculated)
6.378
GRAVY (calculated)
-0.627
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANNIIAPF VMKTYQMVND PKIDGLIAWG TANNSFIVVE PLDFSQRILP VYFKHNNFSS FVRQLNTYGF RKVDPDKWEF ANEWFLRGQT HLLKNIVRKK
101: HSRNSCSQKQ DESEDEEILT EISRLKQEQK ALEHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKERSKRL SLTNREKKRR LVISNSTSCS
201: SVKSEDALGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPT AWLGSRPMIT YEPGTIQSIR SPDANFDKDT FYQSSPSSET PSTAWMNQQK VIIGGRPMMM
301: INEAYGSCPT MSSTLSTGSS ESGGFTAPPM DNFYGYDYGG GGRGGGGGTP ATEEASTPPY PFSLFGGGF
101: HSRNSCSQKQ DESEDEEILT EISRLKQEQK ALEHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKERSKRL SLTNREKKRR LVISNSTSCS
201: SVKSEDALGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPT AWLGSRPMIT YEPGTIQSIR SPDANFDKDT FYQSSPSSET PSTAWMNQQK VIIGGRPMMM
301: INEAYGSCPT MSSTLSTGSS ESGGFTAPPM DNFYGYDYGG GGRGGGGGTP ATEEASTPPY PFSLFGGGF
001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF
Arabidopsis Description
HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.