CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96629
EES02317
EES03187
OQU86794

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	EES02317	AT1G19980.1	21798944
AT3G24520.1	OQU86794	AT1G19980.1	21798944
AT3G24520.1	EER96629	AT3G01300.1	21798944
AT3G24520.1	EES03187	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043536_P001	Maize	nucleus	80.77	84.34
Os01t0733200-01	Rice	nucleus	79.23	82.4
TraesCS3A01G280800.1	Wheat	nucleus	73.08	80.51
TraesCS3D01G280600.1	Wheat	nucleus	73.85	79.67
TraesCS3B01G314600.1	Wheat	nucleus	68.08	77.97
HORVU3Hr1G069590.4	Barley	nucleus, plastid	53.08	58.23
GSMUA_Achr3P15740_001	Banana	nucleus	42.31	39.86
KXG29862	Sorghum	nucleus	40.38	39.33
GSMUA_Achr7P24790_001	Banana	nucleus	30.38	37.8
GSMUA_Achr3P31860_001	Banana	nucleus	43.46	34.88
EER89919	Sorghum	nucleus	36.92	34.41
CDX93024	Canola	nucleus	37.31	31.7
Bra013253.1-P	Field mustard	nucleus	34.23	31.67
CDY50608	Canola	nucleus	37.69	31.11
Bra015050.1-P	Field mustard	nucleus	36.92	31.07
CDX77420	Canola	nucleus	37.31	30.89
CDY39545	Canola	nucleus	37.31	30.89
EES01103	Sorghum	nucleus	43.08	30.68
KRH39283	Soybean	nucleus	37.31	30.31
AT3G24520.1	Thale cress	nucleus	36.92	29.09
VIT_11s0016g03940.t01	Wine grape	nucleus	36.54	28.88
GSMUA_Achr8P27820_001	Banana	nucleus	39.62	28.37
CDY43158	Canola	nucleus	32.31	27.45
EER93298	Sorghum	nucleus	35.77	27.43
EER94213	Sorghum	nucleus	37.69	27.07
Solyc12g007070.1.1	Tomato	nucleus	35.38	24.93
PGSC0003DMT400001025	Potato	nucleus	35.0	24.73
EER90889	Sorghum	nucleus	33.46	23.45
EER95940	Sorghum	nucleus	32.69	22.85
EES00942	Sorghum	plastid	33.85	22.34
EER95463	Sorghum	nucleus	33.46	22.25
KXG20211	Sorghum	nucleus	34.62	21.58
EES06898	Sorghum	nucleus	36.54	19.15
EER93074	Sorghum	nucleus	38.08	18.79
EER95242	Sorghum	nucleus	29.23	18.31
EES01479	Sorghum	nucleus	30.38	18.2
EES18551	Sorghum	nucleus	31.54	17.23
EES05094	Sorghum	nucleus	31.15	16.7
CDY43157	Canola	cytosol	1.15	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	UniProt:A0A1B6Q5W3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0006970	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EnsemblPlants:KXG33312	ProteinID:KXG33312
ProteinID:KXG33312.1	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF173
SMART:SM00415	EnsemblPlantsGene:SORBI_3003G286700	SUPFAM:SSF46785	UniParc:UPI0003C65AC4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:61990167..61991833

Molecular Weight (calculated)

28685.3 Da

IEP (calculated)

8.809

GRAVY (calculated)

-0.393

Length

260 amino acids

Sequence
(BLAST)

001: MGSECKDHLQ LHAAGYGVGV ASPQEEEEEE QAGAIAPFVA KTFHMVSDPA TDAVVRWGGA SNTFLVLDPA TFSDYLLPSY FKHRNFASFV RQLNTYGFRK
101: VDTDRWEFAH ESFLRGQAHL LPLVVRKKKK KKAAGGCREQ LCEEGEEVRG TIRAVQRLRD QQRGMEEELQ AMDRRLRAAE SRPGQMMAFL AKLADEPGVV
201: LRAMLAKKEE LALAGKGSTT PAPGKRRRIG AEAGVGDVAD MAQSRGAVPF PFSVLGQVFY

Best Arabidopsis Sequence Match ( AT3G24520.1 )
(BLAST)

001: MEDDNSNNNN NNNVIAPFIV KTYQMVNDPS TDWLITWGPA HNSFIVVDPL DFSQRILPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EHFLRGQKHL
101: LNNIARRKHA RGMYGQDLED GEIVREIERL KEEQRELEAE IQRMNRRIEA TEKRPEQMMA FLYKVVEDPD LLPRMMLEKE RTKQQQQVSD KKKRRVTMST
201: VKSEEEEVEE DEGRVFRVMS SSTPSPSSTE NLYRNHSPDG WIVPMTQGQF GSYETGLVAK SMLSNSTSST SSSLTSTFSL PESVNGGGGG GCGSIQGERR
301: YKETATFGGV VESNPPTTPP YPFSLFRGGF

Arabidopsis Description

HSFC1Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.