CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016520_P001	Maize	nucleus	89.9	82.58
Os02t0496100-01	Rice	nucleus	71.75	73.26
TraesCS6B01G127000.1	Wheat	nucleus	67.22	71.65
TraesCS6A01G098800.1	Wheat	nucleus	67.42	71.4
TraesCS6D01G083800.1	Wheat	nucleus	67.22	71.18
HORVU6Hr1G017910.1	Barley	nucleus	66.6	70.68
GSMUA_Achr6P27750_001	Banana	nucleus	45.36	55.98
GSMUA_Achr9P01640_001	Banana	nucleus	43.3	55.12
GSMUA_Achr8P28330_001	Banana	nucleus	34.23	50.76
PGSC0003DMT400011871	Potato	nucleus	47.01	47.7
Solyc12g098520.1.1	Tomato	nucleus	46.6	47.28
AT4G13980.1	Thale cress	nucleus	44.54	46.35
KRH58845	Soybean	nucleus	44.54	45.09
KRH42748	Soybean	nucleus	43.92	44.65
CDY12723	Canola	nucleus	43.51	44.42
Bra032752.1-P	Field mustard	nucleus	43.3	44.03
CDY01180	Canola	nucleus	43.09	43.82
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	36.29	40.0
EER93298	Sorghum	nucleus	25.36	36.28
EER94213	Sorghum	nucleus	24.74	33.15
EER95940	Sorghum	nucleus	25.15	32.8
EES01479	Sorghum	nucleus	28.87	32.26
EES18551	Sorghum	nucleus	31.55	32.14
KXG33312	Sorghum	nucleus	16.7	31.15
KXG29862	Sorghum	nucleus	16.91	30.71
EER90889	Sorghum	nucleus	23.3	30.46
EER89919	Sorghum	nucleus	17.11	29.75
EER95463	Sorghum	nucleus	22.06	27.37
EES00942	Sorghum	plastid	21.86	26.9
EER93074	Sorghum	nucleus	27.42	25.24
EES01103	Sorghum	nucleus	18.56	24.66
EER95242	Sorghum	nucleus	20.41	23.86
KXG20211	Sorghum	nucleus	20.0	23.26
EES06898	Sorghum	nucleus	22.47	21.98

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8056054	UniProt:C5XSG6	ncoils:Coil	EnsemblPlants:EES05094
ProteinID:EES05094	ProteinID:EES05094.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	SMART:SM00415	EnsemblPlantsGene:SORBI_3004G150400	SUPFAM:SSF46785	unigene:Sbi.13340
UniParc:UPI0001A8558A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002452118.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:47524227..47528472

Molecular Weight (calculated)

53272.9 Da

IEP (calculated)

5.145

GRAVY (calculated)

-0.671

Length

485 amino acids

Sequence
(BLAST)

001: MEVAAARGTG SGGGGGGGGG GGGPAPFLLK TYEMVDDPSS DAVVSWSDAS DGSFVVWNPP EFAARMLPTY FKHNNFSSFI RQLNTYGFRK IDPERWEFAN
101: EYFVKGQKHL LKNIHRRKPI HSHSHQPGAL PDNERALFED EIDRLSREKA ALQADLWKFN QQQSGAVSQI EDLERRVLDM EQRQTKMLSF LQQAQKNPQF
201: VSKLIKMAEA SPIFADAFHK KRRLPGFEYI TEATETATSF FDDHSSSSRQ EMGNLLNQHF SDKLKLGLCP AMTESNLITL STQSSHEDNG SPHGKHPDYE
301: RTAMECLPLV PQMMELSDTG TSICPAKSLS FAAAANDDGF LPCHLNLSLA SCSMDVGRSQ IPVANGNIVD EKDGPAEMTT PTMEKVGSIP DRCHDADTQN
401: EASGDAGAAA DATGRPHQGS QAPPEEHAAP QVVANDKFWE QFLTERPGCS EAEEASSTLR RDPDHTQQAD QGTTSDRRDM GQLKL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.