Factsheet for VIT_05s0029g00350.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098520.1.1	Tomato	nucleus	58.41	53.77
PGSC0003DMT400011871	Potato	nucleus	58.41	53.77
KRH58845	Soybean	nucleus	57.5	52.82
KRH42748	Soybean	nucleus	56.82	52.41
AT4G13980.1	Thale cress	nucleus	49.32	46.57
CDY01180	Canola	nucleus	47.5	43.82
Bra032752.1-P	Field mustard	nucleus	47.27	43.61
CDY12723	Canola	nucleus	47.05	43.58
GSMUA_Achr6P27750_001	Banana	nucleus	37.27	41.73
GSMUA_Achr9P01640_001	Banana	nucleus	35.0	40.42
Os02t0496100-01	Rice	nucleus	42.05	38.95
TraesCS6A01G098800.1	Wheat	nucleus	37.95	36.46
EES05094	Sorghum	nucleus	40.0	36.29
TraesCS6B01G127000.1	Wheat	nucleus	37.5	36.26
TraesCS6D01G083800.1	Wheat	nucleus	37.73	36.24
GSMUA_Achr8P28330_001	Banana	nucleus	26.82	36.09
HORVU6Hr1G017910.1	Barley	nucleus	37.05	35.67
Zm00001d016520_P001	Maize	nucleus	40.0	33.33
VIT_12s0028g01410.t01	Wine grape	nucleus	22.27	26.56
VIT_10s0003g01770.t01	Wine grape	nucleus	20.0	25.36
VIT_00s0179g00150.t01	Wine grape	nucleus	18.64	22.71
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	23.18	19.92
VIT_11s0016g03940.t01	Wine grape	nucleus	14.09	18.84
VIT_02s0012g01810.t01	Wine grape	nucleus	21.14	18.75
VIT_05s0020g04090.t01	Wine grape	nucleus	15.0	18.75
VIT_04s0008g01110.t01	Wine grape	nucleus	15.91	18.04
VIT_08s0007g03900.t01	Wine grape	nucleus	15.45	12.81

Protein Annotations

EntrezGene:100267444	wikigene:100267444	MapMan:15.5.13	EMBL:AM431517	ProteinID:CAN69275	ProteinID:CAN69275.1
ProteinID:CCB44313	ProteinID:CCB44313.1	ncoils:Coil	UniProt:F6GWF0	EMBL:FN594958	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_fam	EntrezGene:LOC100267444	wikigene:LOC100267444
PANTHER:PTHR10015	PANTHER:PTHR10015:SF157	UniParc:UPI000210836F	ArrayExpress:VIT_05s0029g00350	EnsemblPlantsGene:VIT_05s0029g00350	EnsemblPlants:VIT_05s0029g00350.t01
RefSeq:XP_002265319	RefSeq:XP_002265319.2	:	:	:	:

Description

No Description!

Coordinates

chr5:+:14893559..14903256

Molecular Weight (calculated)

49237.4 Da

IEP (calculated)

6.288

GRAVY (calculated)

-0.813

Length

440 amino acids

Sequence
(BLAST)

001: MEALSCLINK AVRGGFLSGC RLRGRGGNGI QGFRKSDPER WEFANEDFVK DQKHLLKNIH RRKPIHSHSH PQGPPADSER AAFDEEIERL SREKTELQLK
101: VYKVKEQQSA KLQLEDLTQR VSGMEQRQEK LLTFLEKAVQ NPTFVKHLAQ KIESMDFSAY NKKRRLPQVD HLQPVAENSL LDNYSSSRTE CGSIFHKDFS
201: NKLKLELSPA ASDINLLSQS TQSSNEDAGS PHMKISEGDP KEMPMRTEGH LFAPETLELS DTGTSFTFKR DPTLSQQMGV NESQRLLYLQ ESLTSTEEGD
301: GHISCHLNLT LASSPLQVDK SSSTRMPQIG QDIGKSSASR SIADAKEADF RAIHKSRNFA DDDTILSSSQ GASVANEAPP TAPVRVNDVF WEQFLTERPG
401: SSDTEEASSN FRSNPYDEQE DRRAGQGMLG NSKSMEHLTL

Best Arabidopsis Sequence Match ( AT4G13980.1 )
(BLAST)

001: MNGALGNSSA SVSGGEGAGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI
101: KDQKHLLKNI HRRKPIHSHS HPPASSTDQE RAVLQEQMDK LSREKAAIEA KLLKFKQQKV VAKHQFEEMT EHVDDMENRQ KKLLNFLETA IRNPTFVKNF
201: GKKVEQLDIS AYNKKRRLPE VEQSKPPSED SHLDNSSGSS RRESGNIFHQ NFSNKLRLEL SPADSDMNMV SHSIQSSNEE GASPKGILSG GDPNTTLTKR
301: EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL PDKTASQIAK TTLKSQELNF NSIETSASEK NRGRQEIAVG
401: GSQANAAPPA RVNDVFWEQF LTERPGSSDN EEASSTYRGN PYEEQEEKRN GSMMLRNTKN IEQLTL

Arabidopsis Description

HSFA5Heat stress transcription factor A-5 [Source:UniProtKB/Swiss-Prot;Acc:Q94BZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.