Factsheet for VIT_16s0039g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04500_001	Banana	nucleus	50.98	59.45
KRH77766	Soybean	nucleus	52.54	57.97
VIT_02s0012g01810.t01	Wine grape	nucleus	55.86	57.66
GSMUA_Achr3P27600_001	Banana	nucleus	47.66	57.28
PGSC0003DMT400008199	Potato	nucleus	54.69	56.91
Solyc03g097120.2.1	Tomato	nucleus	54.3	56.62
AT5G16820.2	Thale cress	nucleus	52.73	56.13
KRH27709	Soybean	nucleus	50.78	56.03
CDX85486	Canola	nucleus	48.05	55.66
Bra023584.1-P	Field mustard	nucleus	47.46	54.98
CDY38085	Canola	nucleus	46.88	54.67
Bra021381.1-P	Field mustard	nucleus	47.85	53.96
CDY58547	Canola	nucleus	47.66	53.74
GSMUA_Achr4P17040_001	Banana	nucleus	50.98	53.59
Bra032023.1-P	Field mustard	nucleus	47.66	53.51
AT3G02990.1	Thale cress	nucleus	48.83	53.42
Os03t0854500-01	Rice	nucleus	51.95	52.57
TraesCS4A01G322300.1	Wheat	nucleus	53.12	52.21
PGSC0003DMT400069550	Potato	nucleus	49.02	52.18
TraesCS5D01G553300.1	Wheat	nucleus	52.73	51.72
CDX74228	Canola	nucleus	45.9	51.65
Solyc06g072750.2.1	Tomato	nucleus	48.44	51.45
Bra001071.1-P	Field mustard	nucleus	45.51	51.43
CDX92026	Canola	nucleus	44.73	51.12
TraesCS5B01G556200.1	Wheat	nucleus	52.73	51.04
CDY28731	Canola	nucleus	43.16	50.69
CDY16977	Canola	nucleus	42.77	49.66
EER93074	Sorghum	nucleus	50.78	49.34
Bra008593.1-P	Field mustard	nucleus	45.9	48.65
CDX69418	Canola	nucleus	46.09	48.46
Zm00001d034886_P001	Maize	nucleus	49.61	48.2
HORVU5Hr1G123770.1	Barley	nucleus	52.54	46.86
Zm00001d012823_P001	Maize	nucleus	47.85	44.06
VIT_00s0179g00150.t01	Wine grape	nucleus	29.49	41.83
VIT_05s0020g04090.t01	Wine grape	nucleus	27.34	39.77
VIT_12s0028g01410.t01	Wine grape	nucleus	28.52	39.57
VIT_04s0008g01110.t01	Wine grape	nucleus	27.73	36.6
VIT_10s0003g01770.t01	Wine grape	nucleus	24.41	36.02
VIT_11s0016g03940.t01	Wine grape	nucleus	19.92	31.0
VIT_08s0007g03900.t01	Wine grape	nucleus	27.15	26.18
VIT_05s0029g00350.t01	Wine grape	mitochondrion, nucleus	19.92	23.18

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100254514	wikigene:100254514	MapMan:15.5.13	MapMan:26.4.2.1	ProteinID:CCB50592
ProteinID:CCB50592.1	ncoils:Coil	UniProt:F6HEE6	EMBL:FN595750	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EntrezGene:LOC100254514
wikigene:LOC100254514	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162
SMART:SM00415	SUPFAM:SSF46785	TIGR:TC56664	UniParc:UPI0001984D27	ArrayExpress:VIT_16s0039g01840	EnsemblPlantsGene:VIT_16s0039g01840
EnsemblPlants:VIT_16s0039g01840.t01	unigene:Vvi.24271	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002273949	RefSeq:XP_002273949.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:1762685..1766849

Molecular Weight (calculated)

56843.8 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.551

Length

512 amino acids

Sequence
(BLAST)

001: MAASSAISSA ASISNLPPPF LSKTYDMVDD RATDSVVSWS SGNNSFVVWN VPEFSRDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK
101: HLLKSISRRK STHVHTHNQQ LQQQQQQQQQ TQVQSSSGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR QQQQTTDHQL QTVGQRVQDM EQRQQQMMSF
201: LAKAVQSPGF LAQLVQQQND SKRRITGVNK KRRLPKQEEE IHSAKHATTA PDGRVVKYQP LMNEAAKAML RQILKMNATP RREPSINPDA FLIDDVPSSN
301: ALDSLSSSSR VSGVTLAEVP LTSGQSYLPV ESAYSSNHLS AGISETQSSP TVMTDSVKAA QFPEVNVPNS QEDTVLTDFT QMEGIIPEST VEIPNVGMVG
401: TETGSPGYMD PMAGILDGVV PAETDEFSLD SNVDSLLDGI PKLPSINDAF WEQFLAASPL TGDTDEIHSS MLEDNVVNVH ELQPGVNGWN NTQHMDHLTE
501: RMGLLASKAK GM

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.