CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27709	Soybean	nucleus	93.1	93.1
VIT_16s0039g01840.t01	Wine grape	nucleus, plastid	57.97	52.54
GSMUA_Achr4P04500_001	Banana	nucleus	46.77	49.43
CDY38085	Canola	nucleus	46.12	48.75
CDX85486	Canola	nucleus	46.34	48.64
Bra023584.1-P	Field mustard	nucleus	45.69	47.96
PGSC0003DMT400008199	Potato	nucleus	50.65	47.76
AT3G02990.1	Thale cress	nucleus	48.06	47.65
AT5G16820.2	Thale cress	nucleus	49.35	47.61
Solyc03g097120.2.1	Tomato	nucleus	50.0	47.25
Bra032023.1-P	Field mustard	nucleus	46.34	47.15
CDX92026	Canola	nucleus	45.47	47.1
CDX74228	Canola	nucleus	46.12	47.03
Bra021381.1-P	Field mustard	nucleus	45.91	46.92
Bra001071.1-P	Field mustard	nucleus	45.69	46.8
CDY58547	Canola	nucleus	45.69	46.7
KRH74387	Soybean	nucleus	48.28	45.71
GSMUA_Achr3P27600_001	Banana	nucleus	41.38	45.07
Os03t0854500-01	Rice	nucleus	49.14	45.06
KRH07474	Soybean	nucleus	48.92	44.51
GSMUA_Achr4P17040_001	Banana	nucleus	46.55	44.35
CDY28731	Canola	nucleus	41.16	43.81
KRH39566	Soybean	nucleus	47.2	43.8
TraesCS4A01G322300.1	Wheat	nucleus	48.92	43.57
TraesCS5D01G553300.1	Wheat	nucleus	48.92	43.49
TraesCS5B01G556200.1	Wheat	nucleus	48.92	42.91
EER93074	Sorghum	nucleus	48.71	42.88
PGSC0003DMT400069550	Potato	nucleus	44.18	42.62
Solyc06g072750.2.1	Tomato	nucleus	44.18	42.53
CDY16977	Canola	nucleus	39.66	41.72
Bra008593.1-P	Field mustard	nucleus	43.32	41.61
CDX69418	Canola	nucleus	43.53	41.48
Zm00001d034886_P001	Maize	nucleus	46.98	41.37
Zm00001d012823_P001	Maize	nucleus	47.63	39.75
KRH31657	Soybean	nucleus	28.66	39.47
HORVU5Hr1G123770.1	Barley	nucleus	48.71	39.37
KRG91367	Soybean	nucleus	30.6	38.8
KRH15573	Soybean	nucleus	30.17	38.46
KRH05436	Soybean	nucleus	28.66	37.46
KRH32059	Soybean	nucleus	26.94	36.66
KRH61515	Soybean	nucleus	28.88	36.02
KRH35452	Soybean	nucleus	28.23	35.79
KRG95588	Soybean	nucleus	28.45	35.68
KRH67266	Soybean	nucleus	28.66	34.46
KRH39283	Soybean	nucleus	22.2	32.19
KRH59030	Soybean	nucleus	25.0	28.86
KRH42919	Soybean	nucleus	24.78	28.61
KRH11063	Soybean	nucleus	23.92	28.32
KRH21206	Soybean	nucleus	23.49	27.81
KRH20029	Soybean	nucleus	26.72	27.31
KRH67848	Soybean	nucleus	24.57	26.95
KRH32651	Soybean	nucleus	26.51	26.74
KRH58845	Soybean	nucleus	26.94	26.1
KRH42748	Soybean	nucleus	26.72	26.0
KRH02689	Soybean	nucleus	22.63	25.99
KRH19208	Soybean	nucleus	22.41	25.49

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100793665	MapMan:15.5.13	MapMan:26.4.2.1	EMBL:ACUP02000685	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G233000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd
InterPro:HSF_fam	UniProt:I1JAM5	InterPro:IPR036388	EnsemblPlants:KRH77766	ProteinID:KRH77766	ProteinID:KRH77766.1
PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015	PANTHER:PTHR10015:SF162	SMART:SM00415
SUPFAM:SSF46785	UniParc:UPI00023378F6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:55939824..55943497

Molecular Weight (calculated)

51849.7 Da

IEP (calculated)

4.689

GRAVY (calculated)

-0.557

Length

464 amino acids

Sequence
(BLAST)

001: MEGASWNSSV CVAPFLSKTY DMVDDPSTDL VVSWGENNNS FVVWNVPQFA TDILPNHFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS
101: ISRRKSAHVN GSQQASQVHK SAAGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLQNVG QRVQSMEQRQ QQMMSFLAKA MQSPGFLAQF
201: VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLDGH IVKYQSSINE AAKALFRQIL QINNSTTQSS IKNPDVFLID DIPSAIASDS SSSSTQVSNV
301: MVPPISELTS MEVGSQFPLS CMPSNISEVQ SSPAVLGFCR SQGMETESSL LNHELNVMGA DTRNMGEIDM MSTVLDEADE ADHFSPDTDG ISKLPEISDE
401: FWELFLRPSP LTEDTEETKC SSLGCGLTED QGLPSEMGNK QENFDTIQHV DCLTQQMGLH ALEY

Best Arabidopsis Sequence Match ( AT5G16820.1 )
(BLAST)

001: MESVPESVPS PNSNTPSIPP PVNSVPPFLS KTYDMVDDPL TNEVVSWSSG NNSFVVWSAP EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN
101: EGFLRGRKQL LKSIVRRKPS HVQQNQQQTQ VQSSSVGACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATENQLQ NVGQKVQVME QRQQQMMSFL
201: AKAVQSPGFL NQLVQQNNND GNRQIPGSNK KRRLPVDEQE NRGDNVANGL NRQIVRYQPS INEAAQNMLR QFLNTSTSPR YESVSNNPDS FLLGDVPSST
301: SVDNGNPSSR VSGVTLAEFS PNTVQSATNQ VPEASLAHHP QAGLVQPNIG QSPAQGAAPA DSWSPEFDLV GCETDSGECF DPIMAVLDES EGDAISPEGE
401: GKMNELLEGV PKLPGIQDPF WEQFFSVELP AIADTDDILS GSVENNDLVL EQEPNEWTRN EQQMKYLTEQ MGLLSSEAQR K

Arabidopsis Description

HSFA1BHeat stress transcription factor A-1b [Source:UniProtKB/Swiss-Prot;Acc:O81821]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.