CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42919	Soybean	nucleus	94.53	94.53
KRH21206	Soybean	nucleus	69.4	71.17
KRH11063	Soybean	nucleus	69.15	70.92
CDY13041	Canola	nucleus	45.77	59.93
VIT_10s0003g01770.t01	Wine grape	nucleus	50.99	59.08
AT5G45710.3	Thale cress	nucleus	50.25	58.55
Bra017595.1-P	Field mustard	nucleus	49.25	58.24
CDY23108	Canola	nucleus	49.25	58.24
CDY09259	Canola	nucleus	49.5	54.97
Bra012571.1-P	Field mustard	nucleus	52.74	54.36
CDY69818	Canola	nucleus	52.24	53.85
CDY01562	Canola	nucleus	52.49	53.69
Solyc02g072000.2.1	Tomato	nucleus	54.48	53.68
CDX76506	Canola	nucleus	48.76	53.55
CDX99415	Canola	nucleus	50.75	53.12
Bra020988.1-P	Field mustard	nucleus	45.77	52.72
AT4G18880.1	Thale cress	nucleus	52.49	52.62
Solyc03g006000.2.1	Tomato	nucleus	51.49	51.62
PGSC0003DMT400071487	Potato	nucleus	51.24	51.12
GSMUA_Achr8P27750_001	Banana	nucleus	26.62	48.42
Os01t0749300-02	Rice	nucleus	43.78	40.0
EES01479	Sorghum	nucleus	42.79	39.63
Zm00001d012749_P001	Maize	nucleus	42.54	39.49
GSMUA_Achr3P15640_001	Banana	nucleus	43.78	38.85
CDX78902	Canola	nucleus	48.76	37.91
Bra013358.1-P	Field mustard	nucleus	48.76	37.91
TraesCS3A01G289200.1	Wheat	nucleus	40.55	37.73
HORVU3Hr1G071550.3	Barley	nucleus	40.55	37.73
GSMUA_Achr6P31750_001	Banana	nucleus	45.52	37.65
TraesCS3B01G323800.1	Wheat	nucleus	40.3	36.73
TraesCS3D01G289000.1	Wheat	nucleus	37.81	36.54
HORVU1Hr1G081300.1	Barley	nucleus	38.81	36.19
Zm00001d010812_P001	Maize	nucleus	40.05	35.86
TraesCS1A01G350400.2	Wheat	nucleus	37.81	34.31
EES18551	Sorghum	nucleus	40.3	34.03
Os05t0530400-01	Rice	nucleus	38.31	33.55
Zm00001d038746_P001	Maize	nucleus	37.81	32.41
KRH32059	Soybean	nucleus	26.37	31.09
KRH31657	Soybean	nucleus	25.37	30.27
KRH05436	Soybean	nucleus	26.37	29.86
KRH58845	Soybean	nucleus	35.57	29.85
KRH67266	Soybean	nucleus	28.61	29.79
KRG91367	Soybean	nucleus	27.11	29.78
KRG95588	Soybean	nucleus	27.36	29.73
KRH15573	Soybean	nucleus	26.87	29.67
KRH42748	Soybean	nucleus	35.07	29.56
KRH39283	Soybean	nucleus	23.13	29.06
KRH35452	Soybean	nucleus	25.37	27.87
KRH61515	Soybean	nucleus	25.37	27.42
KRH39566	Soybean	nucleus	31.84	25.6
KRH74387	Soybean	nucleus	31.09	25.51
KRH77766	Soybean	nucleus	28.86	25.0
KRH27709	Soybean	nucleus	28.86	25.0
KRH19208	Soybean	nucleus	25.12	24.75
KRH07474	Soybean	nucleus	31.34	24.71
KRH02689	Soybean	nucleus	24.38	24.26
KRH20029	Soybean	nucleus	26.62	23.57
KRH67848	Soybean	nucleus	24.63	23.4
KRH32651	Soybean	nucleus	26.62	23.26

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100798004	MapMan:15.5.13	EMBL:ACUP02003299	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G162300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam
UniProt:I1K431	InterPro:IPR036388	ProteinID:KRH59029.1	EnsemblPlants:KRH59030	ProteinID:KRH59030	ProteinID:KRH59030.1
ProteinID:KRH59031.1	ProteinID:KRH59032.1	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434	PANTHER:PTHR10015
PANTHER:PTHR10015:SF154	SMART:SM00415	SUPFAM:SSF46785	UniParc:UPI0001ED059D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35350322..35352715

Molecular Weight (calculated)

45934.4 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.775

Length

402 amino acids

Sequence
(BLAST)

001: MDDAQGSSSS LPPFLAKTYE MVDDPSTDSV VSWSITSKSF IVWNPPEFAR DLLPRFFKHN NFSSFIRQLN TYGFRKVDPE QWEFANDDFV RGQPHLMKNI
101: HRRKPVHSHS LQNLQAQGPI GEAERQSFTD EIEKLKHDKE QLLVELQKYQ HEWQAYEIQM HSSKDRLEKL EQNQQKMVSS VSHVLQKPVI SVNILPLTET
201: MDRKRRLPRS GHFYDEASVE DAMETSQMLP RENADNTTVL TLNVERLDQL ESSMAFWEAI VHDIGDTFVQ IQSNMDFDES TSCADSPSIS CAQLDVEVRP
301: KSPGIDMNSE PTTAAVPEPV ASKEQPAGTT VAATGVNDVF WEQFLTEDPG ASETQEVQSE RKEYDGRKNE GKPSDLNKFW WNKWNANNLP EQMGHVGQAE
401: KT

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.