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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400071487 Potato nucleus 97.26 96.77
Solyc02g072000.2.1 Tomato nucleus 71.32 70.1
VIT_10s0003g01770.t01 Wine grape nucleus 49.63 57.35
KRH21206 Soybean nucleus 52.37 53.57
KRH42919 Soybean nucleus 53.37 53.23
KRH11063 Soybean nucleus 51.37 52.55
KRH59030 Soybean nucleus 51.62 51.49
CDY13041 Canola nucleus 39.4 51.47
AT5G45710.3 Thale cress nucleus 43.14 50.14
Bra017595.1-P Field mustard nucleus 42.39 50.0
CDY09259 Canola nucleus 44.64 49.45
CDY23108 Canola nucleus 41.65 49.12
CDX99415 Canola nucleus 46.88 48.96
CDX76506 Canola nucleus 44.64 48.91
Bra020988.1-P Field mustard nucleus 42.14 48.42
AT4G18880.1 Thale cress nucleus 48.13 48.13
CDY69818 Canola nucleus 46.13 47.44
CDY01562 Canola nucleus 46.38 47.33
Bra012571.1-P Field mustard nucleus 45.89 47.18
Solyc06g053960.2.1 Tomato nucleus 16.21 45.77
GSMUA_Achr8P27750_001 Banana nucleus 24.94 45.25
Solyc07g055710.2.1 Tomato nucleus 40.65 42.01
EES01479 Sorghum nucleus 42.64 39.4
Zm00001d012749_P001 Maize nucleus 42.39 39.26
Os01t0749300-02 Rice nucleus 41.9 38.18
GSMUA_Achr3P15640_001 Banana nucleus 42.64 37.75
HORVU3Hr1G071550.3 Barley nucleus 40.4 37.5
TraesCS3A01G289200.1 Wheat nucleus 40.4 37.5
GSMUA_Achr6P31750_001 Banana nucleus 44.64 36.83
TraesCS3B01G323800.1 Wheat nucleus 40.15 36.51
TraesCS3D01G289000.1 Wheat nucleus 36.66 35.34
Zm00001d010812_P001 Maize nucleus 38.15 34.08
Bra013358.1-P Field mustard nucleus 43.89 34.04
CDX78902 Canola nucleus 43.89 34.04
Os05t0530400-01 Rice nucleus 38.15 33.33
TraesCS1A01G350400.2 Wheat nucleus 36.66 33.18
HORVU1Hr1G081300.1 Barley nucleus 35.66 33.18
EES18551 Sorghum nucleus 37.41 31.51
Zm00001d038746_P001 Maize nucleus 35.16 30.06
Solyc09g082670.2.1 Tomato nucleus 25.44 28.65
Solyc12g098520.1.1 Tomato nucleus 33.67 28.24
Solyc09g065660.2.1 Tomato nucleus 25.69 27.69
Solyc07g040680.2.1 Tomato nucleus 23.94 26.97
Solyc03g097120.2.1 Tomato nucleus 30.67 25.05
Solyc08g076590.2.1 Tomato nucleus 30.42 24.9
Solyc06g072750.2.1 Tomato nucleus 29.43 24.48
Solyc12g007070.1.1 Tomato nucleus 22.19 24.12
Solyc08g005170.2.1 Tomato nucleus 31.42 23.91
Solyc09g009100.2.1 Tomato nucleus 23.94 18.86
Protein Annotations
Gene3D:1.10.10.10MapMan:15.5.13ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0043565InterPro:HSF_DNA-bdInterPro:HSF_famInterPro:IPR036388UniProt:K4BE23PFAM:PF00447
PRINTS:PR00056ScanProsite:PS00434PANTHER:PTHR10015PANTHER:PTHR10015:SF154SMART:SM00415SUPFAM:SSF46785
EnsemblPlantsGene:Solyc03g006000.2EnsemblPlants:Solyc03g006000.2.1UniParc:UPI0001ED05A1InterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sf:
Description
No Description!
Coordinates
chr3:+:678142..679948
Molecular Weight (calculated)
46082.8 Da
IEP (calculated)
5.220
GRAVY (calculated)
-0.798
Length
401 amino acids
Sequence
(BLAST)
001: MDEAPCSVNA LPPFIAKIYE MVDDPSTDPI VSWSLNNKSF IVRNPPDFAR DLLPRYFKHN NFSSFIRQLN TYGFKKIDPE QWEFANEDFL RGQPHLLKNI
101: YRRKPVHSHS VQNIHSLSSS ALTESERQGY KEDIEKLKHE NESLHLVLHR HKQDHQGLEM QMQVLNQRVQ QVKDRQKNVL STLARTINKP GLALSLMPQL
201: EMNERKRRLP GNSFLYNEIG LEDNQASSSE NTTRENMDHT SLSTLNKEVL DQLESSLTFW EYTLRDIDQT RMRRSSSIDL DESISCADSP AISYPQLTVD
301: VGSKVSDIDM NSEPNGNTTP DVTPPENRVE TASHNVPTGV NDVFWEQFLT ENPGSTDVKP EREDMESKIS ESKTVEDGKF WWNRKTVISL TEQLGHLTPA
401: E
Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)
001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S
Arabidopsis Description
HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.