CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010812_P001	Maize	nucleus	80.25	85.08
Zm00001d038746_P001	Maize	nucleus	75.84	76.97
HORVU1Hr1G081300.1	Barley	nucleus	55.88	61.72
TraesCS1A01G350400.2	Wheat	nucleus	56.3	60.5
Os05t0530400-01	Rice	nucleus	57.98	60.13
GSMUA_Achr8P27750_001	Banana	nucleus	22.9	49.32
CDY13041	Canola	nucleus	28.57	44.3
VIT_10s0003g01770.t01	Wine grape	nucleus	32.14	44.09
AT5G45710.3	Thale cress	nucleus	31.3	43.19
VIT_12s0028g01410.t01	Wine grape	nucleus	33.4	43.09
GSMUA_Achr3P15640_001	Banana	nucleus	40.76	42.83
Bra017595.1-P	Field mustard	nucleus	29.41	41.18
KRH11063	Soybean	nucleus	33.61	40.82
CDY09259	Canola	nucleus	30.88	40.61
CDY23108	Canola	nucleus	28.99	40.59
KRH21206	Soybean	nucleus	33.4	40.56
KRH59030	Soybean	nucleus	34.03	40.3
KRH42919	Soybean	nucleus	34.03	40.3
Solyc07g055710.2.1	Tomato	nucleus	32.56	39.95
AT4G18880.1	Thale cress	nucleus	33.61	39.9
CDX76506	Canola	nucleus	30.67	39.89
Bra012571.1-P	Field mustard	nucleus	32.56	39.74
CDY69818	Canola	nucleus	32.56	39.74
CDY01562	Canola	nucleus	32.56	39.44
EES01479	Sorghum	nucleus	35.92	39.4
CDX99415	Canola	nucleus	31.51	39.06
Bra020988.1-P	Field mustard	nucleus	27.94	38.11
PGSC0003DMT400044683	Potato	nucleus	32.98	38.11
GSMUA_Achr6P31750_001	Banana	nucleus	38.66	37.86
Solyc02g072000.2.1	Tomato	nucleus	32.35	37.75
Solyc03g006000.2.1	Tomato	nucleus	31.51	37.41
PGSC0003DMT400071487	Potato	nucleus	31.51	37.22
EES05094	Sorghum	nucleus	32.14	31.55
KXG33312	Sorghum	nucleus	17.23	31.54
EER93298	Sorghum	nucleus	21.43	30.09
EER94213	Sorghum	nucleus	22.69	29.83
KXG29862	Sorghum	nucleus	16.6	29.59
EER89919	Sorghum	nucleus	17.23	29.39
EER95940	Sorghum	nucleus	22.69	29.03
EER95463	Sorghum	nucleus	22.48	27.37
CDX78902	Canola	nucleus	29.41	27.08
Bra013358.1-P	Field mustard	nucleus	29.41	27.08
EER90889	Sorghum	nucleus	20.8	26.68
EES00942	Sorghum	plastid	20.59	24.87
EER93074	Sorghum	nucleus	27.52	24.86
EES01103	Sorghum	nucleus	18.28	23.84
EER95242	Sorghum	nucleus	20.59	23.61
EES06898	Sorghum	nucleus	23.11	22.18
KXG20211	Sorghum	nucleus	18.7	21.34

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8084440	UniProt:C5Z1H3	ncoils:Coil	EnsemblPlants:EES18551
ProteinID:EES18551	ProteinID:EES18551.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF154	SMART:SM00415	EnsemblPlantsGene:SORBI_3009G208000	SUPFAM:SSF46785	UniParc:UPI0001A88C62
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002440121.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:55539190..55543184

Molecular Weight (calculated)

52624.2 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.657

Length

476 amino acids

Sequence
(BLAST)

001: MEGCNSHGGG GGGGGGGGGG GSSSPPPFLI KTYEMVEDPA TNHVVSWGPG GASFVVWNPP DFSRDLLPKY FKHNNFSSFI RQLNTYGFRK IDPERWEFAN
101: DDFIRGHTHL LKNIHRRKPV HSHSLQTQVN GPLAESERRE LEDEINRLKY EKSLLLADLQ RQNQQRCGIS WQMQSLESRL VAMEERQRHI VASLCDILQR
201: HGVVPGSTTT TLEMETPADH FSKKRRVPKF GFFVDADEPK VEEQQVPSFL QTVGGVVAET PGMSPIRLLN DEPFEKMELA LVSLENFFQR ATHSPAANDI
301: DMYAGGAAEP PSPALSLGEM FSVSAPMDTS INLQSSARHC QNPFASTSGQ DQSSSPLAQA EPPSYDARSP ILPLAQLHEY APRAAEVDMN SDTTTGDTSQ
401: DETTSETEGS HLPAKANDIF WEQFLKDEEG KIEAKEDVKT AVDRSCRRLQ DNVDQITEQM GQLDSAENGS YAPQTY

Best Arabidopsis Sequence Match ( AT4G18880.1 )
(BLAST)

001: MDENNHGVSS SSLPPFLTKT YEMVDDSSSD SIVSWSQSNK SFIVWNPPEF SRDLLPRFFK HNNFSSFIRQ LNTYGFRKAD PEQWEFANDD FVRGQPHLMK
101: NIHRRKPVHS HSLPNLQAQL NPLTDSERVR MNNQIERLTK EKEGLLEELH KQDEEREVFE MQVKELKERL QHMEKRQKTM VSFVSQVLEK PGLALNLSPC
201: VPETNERKRR FPRIEFFPDE PMLEENKTCV VVREEGSTSP SSHTREHQVE QLESSIAIWE NLVSDSCESM LQSRSMMTLD VDESSTFPES PPLSCIQLSV
301: DSRLKSPPSP RIIDMNCEPD GSKEQNTVAA PPPPPVAGAN DGFWQQFFSE NPGSTEQREV QLERKDDKDK AGVRTEKCWW NSRNVNAITE QLGHLTSSER
401: S

Arabidopsis Description

HSFA4AHSF A4A [Source:UniProtKB/TrEMBL;Acc:A0A178UUP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.