CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00942
EES11741
KXG20211

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26150.1	EES00942	AT2G26150.1	21510947
AT2G26150.1	KXG20211	AT2G26150.1	21510947
AT2G26150.1	EES11741	AT5G52640.1	19366428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046204_P001	Maize	nucleus	70.26	80.27
Os06t0565200-00	Rice	nucleus	49.64	62.54
TraesCS7B01G267300.1	Wheat	nucleus	48.2	56.94
TraesCS7A01G360400.1	Wheat	nucleus	48.68	56.7
HORVU7Hr1G087690.1	Barley	nucleus	47.96	54.79
GSMUA_Achr2P16660_001	Banana	nucleus	28.06	42.86
GSMUA_Achr6P00960_001	Banana	nucleus	31.89	42.49
KRH05436	Soybean	nucleus	31.65	37.18
KRH15573	Soybean	nucleus	31.41	35.99
PGSC0003DMT400021234	Potato	nucleus	30.22	35.69
KXG29862	Sorghum	nucleus	22.78	35.58
CDY21503	Canola	nucleus	29.5	35.24
AT2G26150.1	Thale cress	nucleus	29.02	35.07
KRH61515	Soybean	nucleus	30.94	34.68
KXG33312	Sorghum	nucleus	21.58	34.62
VIT_04s0008g01110.t01	Wine grape	nucleus	31.89	34.28
Bra000557.1-P	Field mustard	nucleus	28.3	33.91
CDX83217	Canola	nucleus	29.98	33.51
EER94213	Sorghum	nucleus	29.02	33.43
EER89919	Sorghum	nucleus	21.82	32.62
EER90889	Sorghum	nucleus	29.02	32.61
EER95463	Sorghum	nucleus	29.98	31.97
EER95940	Sorghum	nucleus	28.3	31.72
EER93298	Sorghum	nucleus	24.7	30.38
EES00942	Sorghum	plastid	25.18	26.65
EES01103	Sorghum	nucleus	23.02	26.3
EER95242	Sorghum	nucleus	23.02	23.13
EES06898	Sorghum	nucleus	26.14	21.98
EES01479	Sorghum	nucleus	22.3	21.43
EER93074	Sorghum	nucleus	25.9	20.49
EES05094	Sorghum	nucleus	23.26	20.0
EES18551	Sorghum	nucleus	21.34	18.7

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	UniProt:A0A194YKT8	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	EnsemblPlants:KXG20211
ProteinID:KXG20211	ProteinID:KXG20211.1	PFAM:PF00447	PRINTS:PR00056	PANTHER:PTHR10015	PANTHER:PTHR10015:SF259
SMART:SM00415	EnsemblPlantsGene:SORBI_3010G170600	SUPFAM:SSF46785	UniParc:UPI0007F27ADB	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50202452..50204430

Molecular Weight (calculated)

44902.1 Da

IEP (calculated)

4.506

GRAVY (calculated)

-0.489

Length

417 amino acids

Sequence
(BLAST)

001: MSSAKTPTEP THQPTTQRDE LIAAPAARPP RLRRMERPAV TVKQEEDDDD VVVVLDADGD AAGGHWPGAA GAAPAPAPEP WQTPAGSAVP PFLAKTFELV
101: EDPATDGVIS WGAARNSFVV WDPHAFSAGH LPRRFKHGNF STFLRQLNTY GFRKVSPDRW EFAHAEFLAG QRPLLVNIQR RRPGSTASTP SSAGAGGGGD
201: RDNSELKRLR RDREALAREL TRLRREQEEA RAQLLDMERR VRGTERRQEQ CTASLARAVR SPAFLDGLLA RRGQGGRGGA HVEAAGRKRR LLDAAAAATA
301: PDAADVLAFE ELALAAGAEV EAAAQISDAG NATDMMWYEL LGEEQVEIDA EVDELVAAAA ATEAAAEPWA EMDEKEVEEL VAAAATAATE AEPWAEMDDE
401: EVEELVQQID CIGSTGP

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.