CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016674_P001	Maize	nucleus	91.13	88.98
Os02t0527300-01	Rice	nucleus	77.22	76.91
TraesCS2D01G211400.1	Wheat	nucleus	66.53	66.13
TraesCS2A01G204500.1	Wheat	nucleus	66.13	65.73
TraesCS2B01G232000.2	Wheat	nucleus	61.9	64.63
EER94213	Sorghum	nucleus	27.42	37.57
KXG33312	Sorghum	nucleus	19.15	36.54
EER93298	Sorghum	nucleus	23.99	35.1
EER90889	Sorghum	nucleus	25.81	34.5
EER95463	Sorghum	nucleus	27.02	34.27
EER95940	Sorghum	nucleus	25.0	33.33
KXG29862	Sorghum	nucleus	16.94	31.46
EER89919	Sorghum	nucleus	17.14	30.47
EES01103	Sorghum	nucleus	21.37	29.04
EES00942	Sorghum	plastid	21.57	27.16
EER93074	Sorghum	nucleus	28.63	26.95
KXG20211	Sorghum	nucleus	21.98	26.14
EER95242	Sorghum	nucleus	21.77	26.02
EES18551	Sorghum	nucleus	22.18	23.11
EES01479	Sorghum	nucleus	19.96	22.81
EES05094	Sorghum	nucleus	21.98	22.47

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8059617	UniProt:C5XTC9	ncoils:Coil	EnsemblPlants:EES06898
ProteinID:EES06898	ProteinID:EES06898.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF164	SMART:SM00415	EnsemblPlantsGene:SORBI_3004G163200	SUPFAM:SSF46785	UniParc:UPI0001A85BB0
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002453922.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:51241681..51245486

Molecular Weight (calculated)

54779.3 Da

IEP (calculated)

4.686

GRAVY (calculated)

-0.527

Length

496 amino acids

Sequence
(BLAST)

001: MDRARPTAAA AMLLEPKLED EDVPPLLQQL ASPGPPFVSL DQLMPAPAAE PPRPLEALLQ GPQLPPFLSK TYDLVSEPAL DGVISWGAAG NSFVVWDPST
101: FARDVLPHNF KHNNFSSFVR QLNTYGFRKV HADRWEFAHE DFLRDSKHLL KRIVRRRSSP TKQSSIQPGS SSGESILDPE LHTLRREKNT LLEEVARLKQ
201: EHRQTIEHMS TLNHRLESAE DRQRQMVSFL AKLLQNPSFV RQLKLHREKK EIDSTRVKRK FLKHVPHSIE SGESSSQHAG ESGSHFAVSS SMATSLHDDI
301: TELQNFLLED DDVNFGMGSE NMGLEGIDAP EDIGELIQGF DTQEELELGS GAELLEMPPA SGPLGQDPTI GRSKGKNVLC PGLDATSSEA DCLSPLSDNM
401: GLLSGTMLGA AGRMMDADDQ QVWGVDASAA LQSSCSGTSQ QAFSSHASDP YLMDIANKPE RFWELDFQAL DETDLQLDKC AIDDPALQQQ PSMEKP

Best Arabidopsis Sequence Match ( AT5G03720.1 )
(BLAST)

001: MSPKKDAVSK PTPISVPVSR RSDIPGSLYV DTDMGFSGSP LPMPLDILQG NPIPPFLSKT FDLVDDPTLD PVISWGLTGA SFVVWDPLEF ARIILPRNFK
101: HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGKKHLLK NIHRRRSPQS NQTCCSSTSQ SQGSPTEVGG EIEKLRKERR ALMEEMVELQ QQSRGTARHV
201: DTVNQRLKAA EQRQKQLLSF LAKLFQNRGF LERLKNFKGK EKGGALGLEK ARKKFIKHHQ QPQDSPTGGE VVKYEADDWE RLLMYDEETE NTKGLGGMTS
301: SDPKGKNLMY PSEEEMSKPD YLMSFPSPEG LIKQEETTWS MGFDTTIPSF SNTDAWGNTM DYNDVSEFGF AAETTSDGLP DVCWEQFAAG ITETGFNWPT
401: GDDDDNTPMN DP

Arabidopsis Description

HSFA3HSFA3 [Source:UniProtKB/TrEMBL;Acc:A0A178UHR4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.