CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96629
EES02317
EES03187
OQU86794

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24520.1	EES02317	AT1G19980.1	21798944
AT3G24520.1	OQU86794	AT1G19980.1	21798944
AT3G24520.1	EER96629	AT3G01300.1	21798944
AT3G24520.1	EES03187	AT3G01300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044168_P001	Maize	nucleus	76.16	83.99
Zm00001d011406_P001	Maize	nucleus	80.27	75.71
Os01t0625300-01	Rice	nucleus	66.3	71.39
TraesCS3B01G425200.1	Wheat	nucleus	56.99	68.42
TraesCS3A01G229000.1	Wheat	nucleus	60.55	68.0
TraesCS3A01G393200.1	Wheat	nucleus	58.36	67.83
TraesCS3B01G255600.1	Wheat	nucleus	60.27	67.69
TraesCS3D01G227200.1	Wheat	nucleus	59.45	67.6
HORVU3Hr1G055960.1	Barley	nucleus	60.55	67.58
TraesCS3A01G393100.1	Wheat	nucleus	52.05	67.38
TraesCS3D01G385900.1	Wheat	nucleus	56.16	66.99
TraesCS3D01G386000.1	Wheat	nucleus	57.26	66.56
HORVU3Hr1G088890.2	Barley	nucleus	51.78	65.4
GSMUA_Achr3P15740_001	Banana	nucleus	36.44	48.19
GSMUA_Achr7P24790_001	Banana	nucleus	25.21	44.02
KXG29862	Sorghum	nucleus	32.05	43.82
KXG33312	Sorghum	nucleus	30.68	43.08
GSMUA_Achr3P31860_001	Banana	nucleus	36.99	41.67
EER89919	Sorghum	nucleus	28.77	37.63
GSMUA_Achr8P27820_001	Banana	nucleus	36.16	36.36
KRH39283	Soybean	nucleus	27.95	31.88
Bra015050.1-P	Field mustard	nucleus	26.58	31.39
CDX93024	Canola	nucleus	26.3	31.37
Bra013253.1-P	Field mustard	nucleus	24.11	31.32
VIT_11s0016g03940.t01	Wine grape	nucleus	27.95	31.0
CDY39545	Canola	nucleus	26.58	30.89
CDX77420	Canola	nucleus	26.58	30.89
CDY50608	Canola	nucleus	26.3	30.48
EER93298	Sorghum	nucleus	27.95	30.09
CDY43158	Canola	nucleus	24.66	29.41
AT3G24520.1	Thale cress	nucleus	26.58	29.39
EER94213	Sorghum	nucleus	28.49	28.73
EER95940	Sorghum	nucleus	29.04	28.49
Solyc12g007070.1.1	Tomato	nucleus	27.67	27.37
PGSC0003DMT400001025	Potato	nucleus	27.12	26.9
EER95463	Sorghum	nucleus	28.22	26.34
EER90889	Sorghum	nucleus	26.58	26.15
KXG20211	Sorghum	nucleus	26.3	23.02
EES06898	Sorghum	nucleus	29.04	21.37
EES00942	Sorghum	plastid	22.74	21.07
EER93074	Sorghum	nucleus	29.86	20.68
EES01479	Sorghum	nucleus	24.11	20.28
EER95242	Sorghum	nucleus	21.92	19.28
EES05094	Sorghum	nucleus	24.66	18.56
EES18551	Sorghum	nucleus	23.84	18.28
CDY43157	Canola	cytosol	0.82	3.33

Protein Annotations

Gene3D:1.10.10.10	MapMan:15.5.13	EntrezGene:8084856	UniProt:C5XEC7	ncoils:Coil	EnsemblPlants:EES01103
ProteinID:EES01103	ProteinID:EES01103.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HSF_DNA-bd	InterPro:HSF_fam	InterPro:IPR036388	PFAM:PF00447	PRINTS:PR00056	ScanProsite:PS00434
PANTHER:PTHR10015	PANTHER:PTHR10015:SF187	SMART:SM00415	EnsemblPlantsGene:SORBI_3003G226800	SUPFAM:SSF46785	UniParc:UPI0001A8438D
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002455983.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:56376690..56378642

Molecular Weight (calculated)

39234.6 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.320

Length

365 amino acids

Sequence
(BLAST)

001: MMDGLHTELA LGLLAGCGVG GGGGGDQLLQ TAAFVAKTYQ MVCDPRTDAL VRWGRDNNSF VVVDAAGFSR LLLPCFFKHS NFSSFVRQLN TYGFRKVHPD
101: RWEFAHESFL RGQTHLLPRI VRRKKRGEGG GGACSASGGD AQAQSHYAAA AGCCTGTGED HHHHHQEEEE ADPDNEKEAA LLEEVQRLRQ EQTAIGEELA
201: QMSRRLQATE RRPDQLMSFL ARLAEDPDGV TRSLVEQAAE KKRCRMQLAS QPVRPLPPPL PPAPPPVPVP VPALHHHPLL AALGGGAAKG LDGWQWEWAE
301: QKPSAVVLPT FDPPAATYCG VGVHHVPNLG GGNGGGIIGM GLTAADETAV ETTPFPFCLL GQGFF

Best Arabidopsis Sequence Match ( AT1G32330.1 )
(BLAST)

001: MDVSKVTTSD GGGDSMETKP SPQPQPAAIL SSNAPPPFLS KTYDMVDDHN TDSIVSWSAN NNSFIVWKPP EFARDLLPKN FKHNNFSSFV RQLNTYGFRK
101: VDPDRWEFAN EGFLRGQKHL LQSITRRKPA HGQGQGHQRS QHSNGQNSSV SACVEVGKFG LEEEVERLKR DKNVLMQELV RLRQQQQSTD NQLQTMVQRL
201: QGMENRQQQL MSFLAKAVQS PHFLSQFLQQ QNQQNESNRR ISDTSKKRRF KRDGIVRNND SATPDGQIVK YQPPMHEQAK AMFKQLMKME PYKTGDDGFL
301: LGNGTSTTEG TEMETSSNQV SGITLKEMPT ASEIQSSSPI ETTPENVSAA SEATENCIPS PDDLTLPDFT HMLPENNSEK PPESFMEPNL GGSSPLLDPD
401: LLIDDSLSFD IDDFPMDSDI DPVDYGLLER LLMSSPVPDN MDSTPVDNET EQEQNGWDKT KHMDNLTQQM GLLSPETLDL SRQNP

Arabidopsis Description

HSFA1DHeat stress transcription factor A-1d [Source:UniProtKB/Swiss-Prot;Acc:Q9LQM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.