Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19980.1 | EER99396 | AT1G30860.1 | 21798944 |
| AT1G19980.1 | EES14698 | AT2G32980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0117200-01 | Rice | cytosol | 40.9 | 39.61 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 33.92 | 35.7 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 33.42 | 34.9 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 33.17 | 34.73 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 44.64 | 33.33 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 30.17 | 27.88 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 26.68 | 25.78 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 11.72 | 25.27 |
| Solyc04g081450.2.1 | Tomato | nucleus | 20.2 | 22.56 |
| AT1G19980.1 | Thale cress | nucleus | 18.45 | 21.64 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 10.22 | 21.47 |
| PGSC0003DMT400025536 | Potato | nucleus | 18.95 | 21.17 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 19.7 | 20.84 |
| Bra016482.1-P | Field mustard | nucleus | 16.96 | 20.61 |
| CDY57605 | Canola | nucleus | 11.22 | 20.55 |
| CDY62942 | Canola | nucleus | 16.71 | 20.3 |
| Bra012201.1-P | Field mustard | nucleus | 15.46 | 18.62 |
| KRH11849 | Soybean | nucleus | 17.71 | 18.54 |
| CDY43422 | Canola | nucleus | 14.96 | 18.46 |
| KRH36857 | Soybean | nucleus | 16.71 | 17.49 |
| CDX83731 | Canola | nucleus | 15.21 | 17.43 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.97 | 14.97 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 16.46 | 14.83 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 19.2 | 13.32 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 18.7 | 13.11 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 17.46 | 11.82 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 19.95 | 11.49 |
Protein Annotations
| EnsemblPlants:EES02317 | EnsemblPlantsGene:SORBI_3003G034100 | EntrezGene:8066608 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:EES02317 |
| ProteinID:EES02317.1 | RefSeq:XP_002457197.1 | SEG:seg | unigene:Sbi.7904 | UniParc:UPI0001A84F71 | UniProt:C5XLY5 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:3112908..3118099
Molecular Weight (calculated)
46104.0 Da
IEP (calculated)
9.952
GRAVY (calculated)
-1.009
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDDGGALV PAPAPAPAPA PAPAPGQVYL PEWRRAYDRL VKMLRQAYAQ AEELCVEREH LITEIQFLES RRREREENFQ ARIQKMRKHE KLRKRVDEAE
101: TVVSLGGKDL QIHRYQKLAE LAEDDLEDFK SCISNLAAEN TELKEKLMKF ESLVEIGTDN SDHQKNGKDI REEIRKLKKA YKILKSEKDK ETKELQAENK
201: FVWNQLKTME GEYSRTIKSK NIEVKQATEA AQKLLQNVNE LQVAAQKKDD EIVRLEEEVT NAKERMSILE DELQKLRSLV KGKDLETDKD EDGQPETSRM
301: SKKDTNKANR KSKSTRTSQV TPDISRTSQV TPDRREVKTT TRMHVSETNQ KRKRSSFKSS LSCGNQRCHT RPLQVKAAVS VSPMLLPPNF TVPRLKTPTR
401: P
101: TVVSLGGKDL QIHRYQKLAE LAEDDLEDFK SCISNLAAEN TELKEKLMKF ESLVEIGTDN SDHQKNGKDI REEIRKLKKA YKILKSEKDK ETKELQAENK
201: FVWNQLKTME GEYSRTIKSK NIEVKQATEA AQKLLQNVNE LQVAAQKKDD EIVRLEEEVT NAKERMSILE DELQKLRSLV KGKDLETDKD EDGQPETSRM
301: SKKDTNKANR KSKSTRTSQV TPDISRTSQV TPDRREVKTT TRMHVSETNQ KRKRSSFKSS LSCGNQRCHT RPLQVKAAVS VSPMLLPPNF TVPRLKTPTR
401: P
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.