Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57605 | Canola | nucleus | 59.38 | 88.13 |
| CDY62942 | Canola | nucleus | 69.85 | 68.79 |
| AT1G19980.1 | Thale cress | nucleus | 70.77 | 67.25 |
| CDX83731 | Canola | nucleus | 64.62 | 60.0 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 43.69 | 37.47 |
| PGSC0003DMT400025536 | Potato | nucleus | 35.38 | 32.03 |
| Solyc04g081450.2.1 | Tomato | nucleus | 34.77 | 31.48 |
| KRH36857 | Soybean | nucleus | 36.0 | 30.55 |
| KRH11849 | Soybean | nucleus | 34.46 | 29.24 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 28.62 | 22.41 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 23.69 | 20.05 |
| TraesCS2D01G008300.2 | Wheat | nucleus | 22.77 | 19.32 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 22.46 | 19.16 |
| Os04t0117200-01 | Rice | cytosol | 22.46 | 17.63 |
| HORVU2Hr1G001310.16 | Barley | cytosol | 21.54 | 16.13 |
| Zm00001d039489_P002 | Maize | nucleus | 17.23 | 15.05 |
| EES02317 | Sorghum | cytosol | 18.46 | 14.96 |
| TraesCS1A01G373900.2 | Wheat | nucleus | 8.31 | 14.14 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 7.69 | 13.44 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 13.54 | 11.76 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 14.77 | 8.94 |
| TraesCS6B01G067600.1 | Wheat | nucleus | 15.38 | 8.74 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 14.15 | 7.96 |
| TraesCS1D01G380700.1 | Wheat | cytosol | 16.92 | 7.9 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 14.15 | 7.77 |
| TraesCS1D01G380600.1 | Wheat | nucleus | 10.15 | 7.42 |
Protein Annotations
| EnsemblPlants:CDY43422 | EnsemblPlantsGene:GSBRNA2T00076635001 | ncoils:Coil | PANTHER:PTHR35992 | ProteinID:CDY43422 | ProteinID:CDY43422.1 |
| SEG:seg | UniParc:UPI0004EF0E7D | UniProt:A0A078HZX5 | MapMan:35.2 | : | : |
Description
BnaC07g14890DBnaC07g14890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZX5]
Coordinates
chrLK032556:-:102410..103967
Molecular Weight (calculated)
37250.3 Da
IEP (calculated)
9.838
GRAVY (calculated)
-0.831
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVKSVCRES SDRKKWDKIF KNLVKWLQTK QDAIESLLKD RKSLEDKLKT KHENWISDVR NYEEQLSLMK REVETMQFFE TSKSNLLSVL KEKDHSLCNL
101: KLDEAVDELK DFKSWFDFLT LNTSKDNGDS EAAESLEVKI SKLKLEYERL ASEKKCEVSD LRRENGFALS QFKCIQSGFT DKLKRRDEEI AQANTKISSL
201: LSFQEQLQSS NHENAEIISS LKAEVAEMKA SSIKKDEEIS KLSRDLESLK KSRSFTPVLT RCTMHNGSSV GSEVTRKKDK SAASPPNDKE IRSSKRKRVT
301: ISETPKLFTS TFRLPKLKSP SSGAK
101: KLDEAVDELK DFKSWFDFLT LNTSKDNGDS EAAESLEVKI SKLKLEYERL ASEKKCEVSD LRRENGFALS QFKCIQSGFT DKLKRRDEEI AQANTKISSL
201: LSFQEQLQSS NHENAEIISS LKAEVAEMKA SSIKKDEEIS KLSRDLESLK KSRSFTPVLT RCTMHNGSSV GSEVTRKKDK SAASPPNDKE IRSSKRKRVT
301: ISETPKLFTS TFRLPKLKSP SSGAK
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.