Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G051100.1 | Wheat | nucleus | 41.08 | 62.83 |
| TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 13.99 | 43.01 |
| TraesCS2B01G013500.2 | Wheat | nucleus | 17.13 | 25.52 |
| Os04t0117200-01 | Rice | cytosol | 16.78 | 23.19 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 23.25 | 23.01 |
| EES02317 | Sorghum | cytosol | 13.11 | 18.7 |
| Zm00001d039489_P002 | Maize | nucleus | 11.89 | 18.28 |
| Bra016482.1-P | Field mustard | nucleus | 9.79 | 16.97 |
| AT1G19980.1 | Thale cress | nucleus | 9.97 | 16.67 |
| PGSC0003DMT400025536 | Potato | nucleus | 10.31 | 16.43 |
| Solyc04g081450.2.1 | Tomato | nucleus | 10.31 | 16.43 |
| CDY62942 | Canola | nucleus | 9.09 | 15.76 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 11.19 | 15.42 |
| CDY43422 | Canola | nucleus | 8.74 | 15.38 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 9.79 | 14.78 |
| Bra012201.1-P | Field mustard | nucleus | 8.57 | 14.71 |
| KRH36857 | Soybean | nucleus | 9.79 | 14.62 |
| CDX83731 | Canola | nucleus | 8.74 | 14.29 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 13.29 | 14.15 |
| KRH11849 | Soybean | nucleus | 9.44 | 14.1 |
| CDY57605 | Canola | nucleus | 5.07 | 13.24 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G067600.1 | EnsemblPlantsGene:TraesCS6B01G067600 | Gene3D:1.20.1160.11 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:PAH_sf | ncoils:Coil | PANTHER:PTHR35992 |
| SEG:seg | SUPFAM:SSF47762 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6B:-:45577108..45585439
Molecular Weight (calculated)
63762.2 Da
IEP (calculated)
5.201
GRAVY (calculated)
-0.919
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKPTKEALF FCGPELNGSC GPSSSPSLMA DGDGDGGGEG GGSAEWQPIY DRVQAQAEAL AADRARLEAA SKVQRESWEA ARRLQRSVEE LQAAAREKDA
101: EVGRLRAEAA DATKKLQEVR EADAGRRMRW EAAYVDLILG ANQKLAELRD VDMEDSRICA ETPNSKARLS QNTVDQACVA SDLSTELRKL KQAYETLSSK
201: KDQEVSALFS EKELARNQLV VMQKAYDALL RNKNGEAAQT TEAAQKLQRS VDDLKVSAQK KDEEISRLRA EAVAAEKKLL IAQKLQQSVD DLKAAAQKKD
301: DEIDRLRAEA VAAEKKLREM QSLVQEKDDE IQTINDGQDE TNQKRRRVSS TSNDDEQSES VEDDDVQSGS DEDGDEQSES DEQSRSDDNC DEQSRSDDDD
401: LQSRSNNQVQ KPLLKPKRKR DACNAQVANS NNQSKICQSI PRKHYLNRMA PKPLRSRKLC IVNGKRCLEG TGHWGNYVRL VNDSLADQPD KHKEFVNFLR
501: IFRTYRIRYS ASAMEKALEG HPQLIRQFNQ FLPNNCQITV KEEGGSTPMS SRENISAVAG LVKLKEGGSP RV
101: EVGRLRAEAA DATKKLQEVR EADAGRRMRW EAAYVDLILG ANQKLAELRD VDMEDSRICA ETPNSKARLS QNTVDQACVA SDLSTELRKL KQAYETLSSK
201: KDQEVSALFS EKELARNQLV VMQKAYDALL RNKNGEAAQT TEAAQKLQRS VDDLKVSAQK KDEEISRLRA EAVAAEKKLL IAQKLQQSVD DLKAAAQKKD
301: DEIDRLRAEA VAAEKKLREM QSLVQEKDDE IQTINDGQDE TNQKRRRVSS TSNDDEQSES VEDDDVQSGS DEDGDEQSES DEQSRSDDNC DEQSRSDDDD
401: LQSRSNNQVQ KPLLKPKRKR DACNAQVANS NNQSKICQSI PRKHYLNRMA PKPLRSRKLC IVNGKRCLEG TGHWGNYVRL VNDSLADQPD KHKEFVNFLR
501: IFRTYRIRYS ASAMEKALEG HPQLIRQFNQ FLPNNCQITV KEEGGSTPMS SRENISAVAG LVKLKEGGSP RV
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKKSLWSE GKYPQPSLDN DRDQEHKRDD GLRDRDHEKE
0401: RLEKAAANLK WAKPISELDL SNCEQCTPSY RLLPKNYPIS IASQKTEIGK LVLNDHWVSV TSGSEDYSFS HMRKNQYEES LFKCEDDRFE LDMLLESVNS
0501: TTKHVEELLT KINSNELKTN SPIRVEDHLT ALNLRCIERL YGDHGLDVMD VLKKNVSLAL PVILTRLKQK QEEWARCRSD FDKVWAEIYA KNYYKSLDHR
0601: SFYFKQQDSK KLSMKALLAE IKEITEKKRE DDSLLAFAAG NRLSISPDLE FDYPDHDLHE DLYQLIKYSC AEMCSTEQLD KVMKIWTTFV EQIFGVPSRP
0701: QGAEDQEDVV KSMNQNVKSG SSSAGESEGS PHNYASVADS RRSKSSRKAN EHSQLGQTSN SERDGAAGRT SDALCETAQH EKMLKNVVTS DEKPESKQAV
0801: SIERAHDSTA LAVDGLLDQS NGGSSIVHMT GHCNNNLKPV TCGTELELKM NDGNGPKLEV GNKKLLTNGI AVEITSDQEM AGTSKVEREE GELSPNGDFE
0901: EDNFAVYAKT DFETFSKAND STGNNISGDR SREGEPSCLE TRAENDAEGD ENAARSSEDS RNEYENGDVS GTESGGGEDP EDDLDNNNKG ESEGEAECMA
1001: DAHDAEENGS ALPVSARFLL HVKPLVKYVP SAIALHDKDK DSLKNSQVFY GNDSFYVLFR LHRILYERIL SAKVNSSSPE GKWRTSNTKN PTDSYARFMT
1101: ALYNLLDGTS DNAKFEDDCR AIIGTQSYIL FTLDKLIHKF IKHLQVVVAD EMDNKLLQLY FYEKSRRPET IFDAVYYDNT RVLLPDENIY RIECRLSTPA
1201: KLSIQLMCNG LDKPDVTSVS IDPTFAAYLH NDFLSIQPNA REDRRIYLNR NKRKVCREDE QLYSTDEVKI KNGLECKIAC GSSKVSYVLE TEDLLVRVKK
1301: RRKTLCHNQD SWVRQMRLQY YKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.