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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025536 Potato nucleus 89.42 89.42
VIT_18s0001g14300.t01 Wine grape nucleus 44.57 42.22
AT1G19980.1 Thale cress nucleus 35.1 36.84
Bra012201.1-P Field mustard nucleus 32.59 35.14
Bra016482.1-P Field mustard nucleus 32.03 34.85
CDY43422 Canola nucleus 31.48 34.77
CDY57605 Canola nucleus 20.89 34.25
CDY62942 Canola nucleus 31.48 34.24
KRH36857 Soybean nucleus 36.21 33.94
KRH11849 Soybean nucleus 35.65 33.42
CDX83731 Canola nucleus 28.13 28.86
GSMUA_Achr8P19330_001 Banana nucleus 29.53 25.54
TraesCS2B01G013500.2 Wheat nucleus 25.63 23.96
TraesCS2A01G007200.1 Wheat nucleus 25.35 23.88
TraesCS2D01G008300.2 Wheat nucleus 25.35 23.76
Os04t0117200-01 Rice cytosol 24.51 21.26
EES02317 Sorghum cytosol 22.56 20.2
Zm00001d039489_P002 Maize nucleus 20.33 19.62
HORVU2Hr1G001310.16 Barley cytosol 20.89 17.28
TraesCS1B01G394200.1 Wheat cytosol, mitochondrion, nucleus 8.64 16.67
TraesCS1A01G373900.2 Wheat nucleus 7.8 14.66
TraesCS6A01G051100.1 Wheat nucleus 13.09 12.57
TraesCS1D01G380600.1 Wheat nucleus 13.93 11.24
OQU86794 Sorghum endoplasmic reticulum, nucleus, peroxisome, plastid 16.71 11.17
TraesCS1B01G393900.3 Wheat cytosol 16.99 10.55
TraesCS6B01G067600.1 Wheat nucleus 16.43 10.31
TraesCS1A01G374100.1 Wheat cytosol 15.6 9.46
TraesCS1D01G380700.1 Wheat cytosol 18.11 9.34
Protein Annotations
EnsemblPlants:Solyc04g081450.2.1EnsemblPlantsGene:Solyc04g081450.2ncoils:CoilPANTHER:PTHR35992SEG:segUniParc:UPI0002766064
UniProt:K4BVM4MapMan:35.2::::
Description
No Description!
Coordinates
chr4:+:65422355..65425690
Molecular Weight (calculated)
41117.8 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.852
Length
359 amino acids
Sequence
(BLAST)
001: MAKSKKPKNS SDREKWNKVF NALVHMLTSQ QTQLESLAKE RMILEDRIKL QNDRWVSDIH RFQEQIYEMR KNFTIQEMER MLEVAKSEFV VGLKQRDVAV
101: FQRKLENADG ELADFREWFD YLSQRCSEPN DVPNAATNEK SETRKKAWED EVRRLKTENE KLTSEKNSEI SALLAEKNFI WNQFNKLEHD MTEQLRRKCT
201: ELEHANGKIQ AFTRNIEELQ LSNADKDNTI AMLRSQLDNT TATLRSQMAK LESDSVTKSG EISKLSTELV LLKKCRSASV TPVLRRSTTG SGPSKSGGTS
301: RGTDQRNITV KVEKQSSQAL EKGQRSSKRK AGNSILSAPN LFTSSFKVPK LKMSSPCVT
Best Arabidopsis Sequence Match ( AT1G19980.1 )
(BLAST)
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.