Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc02g082100.2.1 | |
Solyc08g013990.2.1 | |
Solyc10g005220.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G19980.1 | Solyc02g082100.2.1 | AT1G30860.1 | 21798944 |
AT1G19980.1 | Solyc10g005220.2.1 | AT1G30860.1 | 21798944 |
AT1G19980.1 | Solyc08g013990.2.1 | AT2G32980.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400025536 | Potato | nucleus | 89.42 | 89.42 |
VIT_18s0001g14300.t01 | Wine grape | nucleus | 44.57 | 42.22 |
AT1G19980.1 | Thale cress | nucleus | 35.1 | 36.84 |
Bra012201.1-P | Field mustard | nucleus | 32.59 | 35.14 |
Bra016482.1-P | Field mustard | nucleus | 32.03 | 34.85 |
CDY43422 | Canola | nucleus | 31.48 | 34.77 |
CDY57605 | Canola | nucleus | 20.89 | 34.25 |
CDY62942 | Canola | nucleus | 31.48 | 34.24 |
KRH36857 | Soybean | nucleus | 36.21 | 33.94 |
KRH11849 | Soybean | nucleus | 35.65 | 33.42 |
CDX83731 | Canola | nucleus | 28.13 | 28.86 |
GSMUA_Achr8P19330_001 | Banana | nucleus | 29.53 | 25.54 |
TraesCS2B01G013500.2 | Wheat | nucleus | 25.63 | 23.96 |
TraesCS2A01G007200.1 | Wheat | nucleus | 25.35 | 23.88 |
TraesCS2D01G008300.2 | Wheat | nucleus | 25.35 | 23.76 |
Os04t0117200-01 | Rice | cytosol | 24.51 | 21.26 |
EES02317 | Sorghum | cytosol | 22.56 | 20.2 |
Zm00001d039489_P002 | Maize | nucleus | 20.33 | 19.62 |
HORVU2Hr1G001310.16 | Barley | cytosol | 20.89 | 17.28 |
TraesCS1B01G394200.1 | Wheat | cytosol, mitochondrion, nucleus | 8.64 | 16.67 |
TraesCS1A01G373900.2 | Wheat | nucleus | 7.8 | 14.66 |
TraesCS6A01G051100.1 | Wheat | nucleus | 13.09 | 12.57 |
TraesCS1D01G380600.1 | Wheat | nucleus | 13.93 | 11.24 |
OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 16.71 | 11.17 |
TraesCS1B01G393900.3 | Wheat | cytosol | 16.99 | 10.55 |
TraesCS6B01G067600.1 | Wheat | nucleus | 16.43 | 10.31 |
TraesCS1A01G374100.1 | Wheat | cytosol | 15.6 | 9.46 |
TraesCS1D01G380700.1 | Wheat | cytosol | 18.11 | 9.34 |
Protein Annotations
EnsemblPlants:Solyc04g081450.2.1 | EnsemblPlantsGene:Solyc04g081450.2 | ncoils:Coil | PANTHER:PTHR35992 | SEG:seg | UniParc:UPI0002766064 |
UniProt:K4BVM4 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:65422355..65425690
Molecular Weight (calculated)
41117.8 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.852
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSKKPKNS SDREKWNKVF NALVHMLTSQ QTQLESLAKE RMILEDRIKL QNDRWVSDIH RFQEQIYEMR KNFTIQEMER MLEVAKSEFV VGLKQRDVAV
101: FQRKLENADG ELADFREWFD YLSQRCSEPN DVPNAATNEK SETRKKAWED EVRRLKTENE KLTSEKNSEI SALLAEKNFI WNQFNKLEHD MTEQLRRKCT
201: ELEHANGKIQ AFTRNIEELQ LSNADKDNTI AMLRSQLDNT TATLRSQMAK LESDSVTKSG EISKLSTELV LLKKCRSASV TPVLRRSTTG SGPSKSGGTS
301: RGTDQRNITV KVEKQSSQAL EKGQRSSKRK AGNSILSAPN LFTSSFKVPK LKMSSPCVT
101: FQRKLENADG ELADFREWFD YLSQRCSEPN DVPNAATNEK SETRKKAWED EVRRLKTENE KLTSEKNSEI SALLAEKNFI WNQFNKLEHD MTEQLRRKCT
201: ELEHANGKIQ AFTRNIEELQ LSNADKDNTI AMLRSQLDNT TATLRSQMAK LESDSVTKSG EISKLSTELV LLKKCRSASV TPVLRRSTTG SGPSKSGGTS
301: RGTDQRNITV KVEKQSSQAL EKGQRSSKRK AGNSILSAPN LFTSSFKVPK LKMSSPCVT
001: MVVKSVSGDS SERENWETIF KSLVKILQTK QDQLESLLKD KKILESEIKT NNENWLSDVR NYEDQLSLMM KEIETTKMFQ LLETYKSNLL CGLKEKDRSL
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
101: CNLKLEHSLD ELKDFKAWFD FLTLNTNVES VSGNSEGTAI KSLEAKIRKL KLEYEKLASE KKCEVSDLLR ENGFAWNQFK CIESEFTDKL KRKDDEIVQA
201: NTKISSLISY QEQLQSSNQE KDETISRLKA KMAEMETNST KKDEEISKLT RDLESAKKSR GFTPVLTRCT KLEKRSNGNT VGSHISTKKD KSAASTTNEK
301: VSKSSKRKRA KNMTPVSVSE VPKLFTSTFR LPKLKSPSNG AI
Arabidopsis Description
Cytomatrix protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q84JE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.