Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G380600.1 | Wheat | nucleus | 73.3 | 31.46 |
| TraesCS1B01G393900.3 | Wheat | cytosol | 84.29 | 27.85 |
| TraesCS2A01G007200.1 | Wheat | nucleus | 34.03 | 17.06 |
| TraesCS1A01G374100.1 | Wheat | cytosol | 51.31 | 16.55 |
| Os04t0117200-01 | Rice | cytosol | 35.6 | 16.43 |
| TraesCS6A01G051100.1 | Wheat | nucleus | 26.7 | 13.64 |
| CDY57605 | Canola | nucleus | 13.09 | 11.42 |
| EES02317 | Sorghum | cytosol | 21.47 | 10.22 |
| Zm00001d039489_P002 | Maize | nucleus | 19.9 | 10.22 |
| GSMUA_Achr8P19330_001 | Banana | nucleus | 21.47 | 9.88 |
| VIT_18s0001g14300.t01 | Wine grape | nucleus | 17.8 | 8.97 |
| CDY62942 | Canola | nucleus | 14.66 | 8.48 |
| Bra016482.1-P | Field mustard | nucleus | 14.66 | 8.48 |
| CDY43422 | Canola | nucleus | 14.14 | 8.31 |
| KRH11849 | Soybean | nucleus | 16.23 | 8.09 |
| AT1G19980.1 | Thale cress | nucleus | 14.14 | 7.89 |
| Bra012201.1-P | Field mustard | nucleus | 13.61 | 7.81 |
| Solyc04g081450.2.1 | Tomato | nucleus | 14.66 | 7.8 |
| KRH36857 | Soybean | nucleus | 15.18 | 7.57 |
| PGSC0003DMT400025536 | Potato | nucleus | 14.14 | 7.52 |
| CDX83731 | Canola | nucleus | 13.61 | 7.43 |
| OQU86794 | Sorghum | endoplasmic reticulum, nucleus, peroxisome, plastid | 20.42 | 7.26 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G373900.2 | EnsemblPlantsGene:TraesCS1A01G373900 | PANTHER:PTHR35992 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1A:-:549588603..549589789
Molecular Weight (calculated)
21375.8 Da
IEP (calculated)
4.930
GRAVY (calculated)
-0.832
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCGSGGAAG PGDGGRAEWQ RIYDRVEALA AGRARLEARN RTQHEFWDAR DKINHSRLHQ AELSRSRWEA ACRELLPGDN PKLAELLESD LEDSRTCEAL
101: LDTENSELLA QLKEDGTCVE LNENTADHDH NSGDLISDLR KLKRTYETIL EGELNEMHSS DKENDIQKLK VGESKTLKRK LASLSTVSIS F
101: LDTENSELLA QLKEDGTCVE LNENTADHDH NSGDLISDLR KLKRTYETIL EGELNEMHSS DKENDIQKLK VGESKTLKRK LASLSTVSIS F
001: MKHFMMPRNA ILRDIGESQS PNPSLTKSKS QRKIKSSKEN APPPDLNSLI PDHRSSPAKL KSPLPPRPPS SNPLKRKLIA EATADNGVAI GVSDSGVKVI
101: VRMKPPSKGE EEEMIVKKIS NDALTINEQT FTFDSIADPE STQDEIFQLV GAPLVENCLA GFNSSVFAYG QTGSGKTYTM WGPANGLLEE HLSGDQRGLT
201: PRVFELLFAR LSEEQAKHAE RQLKYQCRCS FLEIYNEQIT DLLDPSLKNL MIREDVKSGV YVENLTEEYV KNLKDLSKLL VKGLANRRTG ATSVNAESSR
301: SHCVFTCVVE SHCKSVADGL SSFKTSRINL VDLAGSERQK LTGAAGDRLK EAGNINRSLS QLGNLINILA EISQTGKQRH IPYRDSRLTF LLQESLGGNA
401: KLAMVCAVSP SQSCRSETFS TLRFAQRAKA IQNKAIVNEV MQDDVNFLRE VIRQLRDELQ RVKDDKGNNP TNPNAAYTTS WNARRSLSLL RSFGLGHPKS
501: LPNGDDDGDT EMEIDEEAVE RLCAQMGLSP PAEDNNQEMS RVEKINSSLQ TVVLKDESYN NSHLKSSEAT DVNMEDACCQ TENNGSETDN ALTVAETMDD
601: GSSVQPDSIT NSLHSCISDT NQGNSPSKAE NIPSCQDLVI EADVSAIIHD LKAQLQCYTD SSLTSARRRG SLLKLTYACD PNQAPQLNTI PESVDEGPEK
701: TLEQERLRWT EAESNWISLA EELRTELDTN RLLMEKQKRE LDTEKRCAEE LTEAMQMAMQ GHARMIEQYA DLEEKHIQLL ARHRRIREGI DDVKKAAARA
801: GVKGAESRFI NALAAEISAL KVQREKEVRY FRDENKSLQS QLRDTAEAVQ AAGELLVRFK EAEEGLTFAQ KRAMDAEYEA SEAYKKVDKL KRKYETEIST
901: VNQQHNAEPQ NPIESLQASC NDDAMAKYDE PSASDGDNQW REEFQPFYKK DEELSKLAEP SWFSGYDRCN I
101: VRMKPPSKGE EEEMIVKKIS NDALTINEQT FTFDSIADPE STQDEIFQLV GAPLVENCLA GFNSSVFAYG QTGSGKTYTM WGPANGLLEE HLSGDQRGLT
201: PRVFELLFAR LSEEQAKHAE RQLKYQCRCS FLEIYNEQIT DLLDPSLKNL MIREDVKSGV YVENLTEEYV KNLKDLSKLL VKGLANRRTG ATSVNAESSR
301: SHCVFTCVVE SHCKSVADGL SSFKTSRINL VDLAGSERQK LTGAAGDRLK EAGNINRSLS QLGNLINILA EISQTGKQRH IPYRDSRLTF LLQESLGGNA
401: KLAMVCAVSP SQSCRSETFS TLRFAQRAKA IQNKAIVNEV MQDDVNFLRE VIRQLRDELQ RVKDDKGNNP TNPNAAYTTS WNARRSLSLL RSFGLGHPKS
501: LPNGDDDGDT EMEIDEEAVE RLCAQMGLSP PAEDNNQEMS RVEKINSSLQ TVVLKDESYN NSHLKSSEAT DVNMEDACCQ TENNGSETDN ALTVAETMDD
601: GSSVQPDSIT NSLHSCISDT NQGNSPSKAE NIPSCQDLVI EADVSAIIHD LKAQLQCYTD SSLTSARRRG SLLKLTYACD PNQAPQLNTI PESVDEGPEK
701: TLEQERLRWT EAESNWISLA EELRTELDTN RLLMEKQKRE LDTEKRCAEE LTEAMQMAMQ GHARMIEQYA DLEEKHIQLL ARHRRIREGI DDVKKAAARA
801: GVKGAESRFI NALAAEISAL KVQREKEVRY FRDENKSLQS QLRDTAEAVQ AAGELLVRFK EAEEGLTFAQ KRAMDAEYEA SEAYKKVDKL KRKYETEIST
901: VNQQHNAEPQ NPIESLQASC NDDAMAKYDE PSASDGDNQW REEFQPFYKK DEELSKLAEP SWFSGYDRCN I
Arabidopsis Description
KIN12BKinesin-like protein KIN-12B [Source:UniProtKB/Swiss-Prot;Acc:Q8L7Y8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.